Gene detail

Detailed information of FUN_023899-T1 in Siderastrea siderea

Genomic Location: contig_22:4545869...4562837
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00764 all species →	Arginosuc_synth	Arginosuccinate synthase N-terminal HUP domain	Domain	Interproscan
PF20979 all species →	Arginosuc_syn_C	Arginosuccinate synthase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR024074 all species →	Homologous_superfamily	Argininosuccinate synthetase, catalytic/multimerisation domain body	Interproscan
IPR001518 all species →	Family	Argininosuccinate synthase	Interproscan
IPR023434 all species →	Family	Argininosuccinate synthase, type 1 subfamily	Interproscan
IPR048267 all species →	Domain	Arginosuccinate synthase-like, N-terminal domain	Interproscan
IPR018223 all species →	Conserved_site	Argininosuccinate synthase, conserved site	Interproscan
IPR048268 all species →	Domain	Arginosuccinate synthase C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11587 all species →	ARGININOSUCCINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004055 all species →	Molecular Function	argininosuccinate synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006526 all species →	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0000050 all species →	Biological Process	urea cycle	Interproscan
GO:0000053 all species →	Biological Process	argininosuccinate metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01940	argG, ASS1; argininosuccinate synthase	EC:6.3.4.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.