Gene detail

Detailed information of FUN_023919-T2 in Dendrogyra cylindrus

Genomic Location: contig_49:1221968...1233362
NR annotation: XP_020608081.1, exonuclease 1-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_023919-T2

AAAGCTTATGCCATTCATGTTTTAGGAGTGTAGAAAGAAGGGCGTGGACTGTATTGTAGCACCATATGAGGCTGATGCTCAATTGGCATATCTTATGAAAGCTGGAATAGCTCAGGCCATCATATCTGAAGACTCAGATTTACTTGTGTATGGATGCCAAAAGgtaatCTTCAAGATGGATGCATGTGGTCACGGTTTAGCAGTTGATCTCGCAGATCTTTCCAAGTTAACAAAGCTCAAGCTACATGAGTTCACTCAAGAGAAGTTCCGACACATGTGTATTCTGTCTGGCTGTGATTATCTGCCTTCCATTAAGGGCATTGGTCTCCAAACGGCTATTAAACTACTGCGAAAATCATCCAGTGTTCACAAGCTAATACGATCCCTGAGGATTGAAGCAAAGATGCACGTCCCTGAAGACTACGAGAAGAACTTCAAACAGGCAGACGAGACGTTCTTGTATCAGCTGGTGTTTGATCCAGTCTTCATGAAACTGGTTCCTCTGAATGAGCTGCCAGAAGGTTTGCAGCCTGGCGATCTTGAGTTTGCAGGACCGTTAATGACGAAGGAAAAAGCCACAGGTATTGCATTCGGTAACATAAACCCCATTACGGGTGAAGTGATGGCGGATTTCAGCCCTCAAAAGATCAAGATCATCGATCTAGGATCTGGCCGTAAATCAGATGACGACAGCCAATCACATGCCCTCACCCCAGTATCCACGTCATCCTTTGGTCATTCGGTCATGAGCAAGAGAGGAAAGACTGAGTACGACGTGCAGAAAAACCTCTCGGGACTAATGCTCGATTCCCAGCCATCCGCCAAAACAAGAAAGCCTTTCGTCCCGCCAGGGCAGAAAAGAAAAACTGAAGAGGAAAGCCTTGACGATGATTCGCTTGTCAACATGTATACTGCTCTGAAGCCGAGGCACAAGCCTCAGCATTCTCATGCACCGTCGGCGCATTTCCAACGCAAGCCAACTGGTGCAGTGCCTGGTCACGGGATGAAGGGGTCAAAGTTCAAGAACCCATTCAAAATCCGTGCTCAGGAGGTCGAGTCACAAGATAAAGTTGAAATCAGTAGATATTTTAATATCTCCGGAAGACCTGAATCATCGGAGTGCAGTTCAGTTACAAAGGATCACATTCTCACAGGAAATGCAAACTTGGAATCAGAAGACGAGGAAGAAGATACAACCACTACAAGTACATCACAACCTGGTGGTATTCTTAGTGCGTTGAAAGACAACGTAGAGGAAGATTTATCCGACAGCGAACTCGCCGGGAATTGTAGCGACATTGACGATGTGGAGGAGGAGAACAAAGAGAATAAACTTAGAACTTGTGAAGAGTCGAGCGAGAGACCCATTGCTAACGTTAACAAGCTTGAACATTCCAAACGCAAGTGGGAAGAGGAAATTTCGAGTCAAGAAAGCGACTCTTCGCAGAAACTTGCGTGTTCTgctaaaaaaattcaaagccAAAGCGTGTTAACAACTCATTCATCAAACATAAGCGATACCCGGAATCCGAAATCCGGTAAACCAAACTTGGGTGAACTTTTTGGATACAAGCGATCTCTGCAGACAAGAAAACTCGATGAGGATACATCGGTGTCCTCGAGTGAGAACACCAATGCCAAAGAGTGTATTGCCGTGCGGCCAATTGAGGTGATAGATATCGATAGTGGTTACCTGTCAGATACAGAGATGAGTACAGATGGCGACACGCCCACCCCTACACAGTCAGGTGCCGCGCGTCTGACCCCACCGTCCTCGGGAGGAATTTTGCCGCGTATGCAAGGCAGTGCCGCAGGAACCAAGACCATGAAGAAACTGATTCAGCTGAATCCTAAAGCAGGAACAAGAACTACTGGTCTTGGCAGATGTCGATCTATGGGAATAACAAGAAAGAAATCGAAGTCAAACAACTCGAAGAATTCGCAGAACTCTGGTTCAACGTCGACTTTGTTTAGTTATTTTGAGTTCGACAGACGAAAGAAACCAAGATTGTGTAGCGACAACAAAGATGATCTATAATTCTTACTGGTGCAGTTTTGCGCGGTTTTCGCCCCTCACGATACCGGATTTAACGGTGATATCTCCGTAAACAACAAGCATCCAAGAAAGCCCAGGAGATGTGGACCTTGTGAAACACTTGTGGCAGAAACCAGAGGAAATGAAAATTCTCCTGCTGGATGGTTAACATTCTTGTACAAACTACAGACACTCCTGCCGCGCAAAACGGAATAAAAATGAATTCGAGCCCTTTGTCTATAGATTCTTATACATAAGTATCTTCATaatattttgaaatatattCGTTAGATAAATGAATGAATATCCAATTTCTGTTTCAGTAGATCCCAAAGTTAACATTGATAATAAAATTTTGAAGCTCACATGCGTGATACATTTTTTGAGATGAAAACGTTTTTACCGTTATTTTACAAGAATAAGGGATGATGCTTTATACGTGTTACAGTTTGTGGAATAAATTTAAGTTCATTACAGAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q803U7	Exonuclease 1 OS=Danio rerio OX=7955 GN=exo1 PE=2 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2
Q9QZ11	Exonuclease 1 OS=Mus musculus OX=10090 GN=Exo1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR037315 all species →	Domain	Exonuclease-1, H3TH domain	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_023919-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.