Detailed information of FUN_023954-T2 in Acropora pulchra

Genomic Location: ptg000018l:528153...532438
NR annotation: XP_015770286.1, PREDICTED: non-histone protein 10-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q03435Non-histone protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP10 PE=1 SV=1
Q4H2R2FACT complex subunit SSRP1 OS=Ciona intestinalis OX=7719 GN=SSRP1 PE=2 SV=1
P07156High mobility group protein B1 (Fragment) OS=Cricetulus griseus OX=10029 GN=HMGB1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008289 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →
HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →
DomainHigh mobility group box domainInterproscan
IPR036910
all species →
Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR051965
all species →
FamilyChromatin Regulation and Neuronal Gene ExpressionInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46040
all species →
HIGH MOBILITY GROUP PROTEIN 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0010468
all species →
Biological Processregulation of gene expressionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_023954-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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