Detailed information of FUN_023981-T1 in Siderastrea siderea

Genomic Location: contig_22:5684242...5719213
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12931
all species →		Sec16_CSec23-binding domain of Sec16DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR024298
all species →		DomainAncestral coatomer element 1, Sec16/Sec31Interproscan
IPR024880
all species →		FamilyCOPII coat assembly protein, Sec16Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13402
all species →		RGPR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006914
all species →		Biological ProcessautophagyInterproscan
GO:0007030
all species →		Biological ProcessGolgi organizationInterproscan
GO:0012507
all species →		Cellular ComponentER to Golgi transport vesicle membraneInterproscan
GO:0048208
all species →		Biological ProcessCOPII vesicle coatingInterproscan
GO:0070971
all species →		Cellular Componentendoplasmic reticulum exit siteInterproscan
GO:0070973
all species →		Biological Processprotein localization to endoplasmic reticulum exit siteInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20353SEC16; COPII coat assembly protein SEC16-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023981-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
10TPM > 0
7Conditions
23.9Max TPM
1.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 1.19 23.85
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.28 5.52
holobiont · control.pH Control.temp 19 2 1.46 19.57
Whole organism 4 4 17.23 20.63
unannotated 1 1 6.08 6.08
live coral tissue/skeleton 1 1 11.64 11.64

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP