Detailed information of FUN_023982-T1 in Siderastrea siderea

Genomic Location: contig_22:5728548...5732084
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04905
all species →		NCD2NAB conserved region 2 (NCD2)FamilyInterproscan
PF18017
all species →		SAM_4SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006989
all species →		DomainNAB co-repressor, domainInterproscan
IPR038398
all species →		Homologous_superfamilyNAB co-repressor domain 2 superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for FUN_023982-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0045892
all species →		Biological Processnegative regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_023982-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_023982-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
36TPM > 0
7Conditions
100.9Max TPM
7.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 3.30 20.68
holobiont · low.pH Control.temp 20 8 10.63 100.92
holobiont · control.pH_high.temp 20 7 10.18 58.37
holobiont · control.pH Control.temp 19 9 8.29 43.49
Whole organism 4 4 2.82 4.50
unannotated 1 1 1.34 1.34
live coral tissue/skeleton 1 1 6.64 6.64

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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