Gene detail

Detailed information of FUN_024108-T1 in Siderastrea siderea

Genomic Location: contig_22:7566027...7578533
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_024108-T1

ACTTGggtaaacaacaacaagaaggcTTGGCTAGCAAGCTGAAAGTCAGCGCGGCTACCAAGGAAGCGCGATCGCGTTGTATTCTATGTAAGAACATACATGAAATTATGAGTAATGTCATTAGGAGAACGAATAGCCTCTGGACACTAAAACTAAGCGTATATAGAGGGTATACTTACTGAACCGCGTGCACTGTGAATTTTCTGTATAAAACTGTaattatgaatatatctttATAAGAATTTACCATGTCAGATGATGAAGATGTTGCTCCTGTCGTTAAGAAGCAAAGGATTCATTTTGGAAGTCTTGAAGCTGTAGAGAGGGATCGTCTGGCAGCTGGTGCGTCCAAAGATGAGGATGATGACGAGAAAGAGGATGGACAAGAGGGCGAAGAGAACGGTGTATCGGCAGCTGTCCTTGCTGGAATAAGAGCGGGAAATATAAATGTCAGCGATGGAGAATACCTGGAGCTGTCTGAAGACCAAACCAGTGAGAGGCATCAGGAACTACTAGCAGAGTTTGAGAGAAGGAAAAAGGCTCGAGCAATCACTGTACCCACAGATGATGCAGCAGTTAAAGCGAGACTGAGGGAACTTGGGGAACCAATAACTCTGTTTGGAGAGGGTCCACCTGAGAGAAGAGACAGATTAAGAAGCCTTTTGTCAGAACTTGGGGAAGATGTGCCCAGAaaggaaatggaagaaaaagaaaagcatGAACCAGAATTGGAGGAGGAAGTGTGGTATCATGAAGGTTCTCCTGAACTCAAAGTAGCTCGTTTGTGGATTGCCAAGTATTCTCTTCCTAGGGCATGTGAAAGACTGAAACAAATGCGTATCCAGCAAGCCAGACCTGATCCAGAAAAGGCCGCTAAGACACAAGAGTTGCATCGCAAGCTACGGGGTCTGAACAATTTTTGTAGTCAGATTGGTGATGACAGACCACTTTCCTTTTGTCAGTTCTCTCCAGACTCAAGTATATTAGCTACTGCATCTTGGAGTGGCTTATGTAAACTTTGGTCAATTCCTGACTGTGAGCCAATAGCAGTTCTTCGAGGTCACAATGAGCGAGTTGGTTCAATAGTGTTTCACCCTCAAGCCACACTTTCATTAAATGAGACAGGGCCATGTATGGCTTCTTGTGATGCAGATGGTGTTGTGCTTCTCTGGTCTCTTAACATGGACACACCCTTGGCAAATATAGAGGGACATGAAAAGCGTGTATCTCGTGTGGCATATCATCCTTCTGGGCGATTTCTAGCCTCTTGTTGTTTTGATCATTCATGGAGATTGTGGGATTTAGAACAACTCAAAGAAGTTCTTCATCAGGAAGGTCATTCAAGAGAGGTGTACAATGTCGCATTTCAAATTGATGGCTCACTGGCAGCAACATGTGGACTGGATGGTAGGGGACTGGTATGGGATCTCAGAACGGGTCAGTGTATTATGGCCCTGGATGGACACCTGAAGAAGGTCCTTGGGATCGACTTTGCAAATGATGGATTTCGTATAGCTACCGGCAGCGAGGACCAGAAGATAATGATCTGGGACTTGAGGAAGAGGCAAAGCATATACACCATACCAGCACATACCAACCTCATATCACACGTCAAGTTTCATGATGACTTCTTAGTCTCAGCATCTTATGACTCAACGATCAAGGTGTGGTCTCACCCAGGATGGGCGCCACTCAAAACTCTGACAGGACACGAGCAGAAAATCAGCTGCGTGGACATTTCACCAGATGGGCAATACGTTGTGTCCAGCTCCTTCGACCGTACATTCAAGCTGTGGACTTCCGACTAATCACTGGCGAACATGTGACAAGGTTTGAGCCAGCGGTTGATCTTATCGGTTGTGTTAACAGGGACTGTAATACATCGCCCAAGGTCCAGGTATTGGTTGTGATACTCGCCCACGCAGTTGGTCAGACGGATGTATAGGGTcgctgaagcgtgacgattctTGTGACACTTGTATATAAGCTTAgaattgttttaattaaaaatgtttGATAATGC

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08799 all species →	PRP4	pre-mRNA processing factor 4 (PRP4) like	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036285 all species →	Homologous_superfamily	PRP4-like superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR014906 all species →	Domain	Pre-mRNA processing factor 4 (PRP4)-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19846 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0017070 all species →	Molecular Function	U6 snRNA binding	Interproscan
GO:0030621 all species →	Molecular Function	U4 snRNA binding	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12662	PRPF4, PRP4; U4/U6 small nuclear ribonucleoprotein PRP4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.