Gene detail

Detailed information of FUN_024112-T1 in Siderastrea siderea

Genomic Location: contig_22:7699121...7719358
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_024112-T1

atggcggctggcGGGAATGTTGAAGTCGTTTGGAGCAATCTTATAAACTACCTTTCGCCCACGGCTCCCCAGCTTCTTGGAACCTTAGAGTCGTTGGAACAGCTGAGGCAATCGCCGCGGATGTTCTcccgcttacgagagtggttcTTAGAAAACTGTCAGAAAGATTTAAAAGATGAAATTCGACCGCGATTTTGGTCTCATTTCCAAAAGAGCGAGGTTGAAGCAAAGACATACAATACCCTGCTCACTGCTGTTAGTGAGCTTTACAAAAGTGTATTGGCATACAAACCATTTGTGGAGCTACTACAGTCCTTGACAGGATCATTACCACTTAGCAATCTGGAGTTGCAGTTTGAAGGCTTAGTGAGGGCTGTTGTCTTTTGCGATGTTCCTGAACAGTTTAAAAGTTTAGTGCATGCTTTCTACAGCCATGCATTTCAAGCATATCAGTCCataaacaaaaaggaaaatggaCTAATGGATACATCAGGTGCATCTTCAATGAGTGTCGAAGAAGACAACGAAGCAGCAGAGGATGATGATGTTGAATCTCTCATTTGCGCTGGCTGTGCAGAAGAGAAGGACAGTTGTCACTGCACAAAGATCATTGAAGTATTTTCACAATTCAACTCACAACTTCACTCTCTTGGATTGATGAAAAAGGTTGCTGAACCAGCATTCCTGTCAGTCATTCATAGAGAGATTCAAAGAAGAATCAAAGAAAAGTGCAAAGGCGAGTTTGAGAGTTCTTTCCTTGCACCCTTGTTACACTGGATTGATATTGAGTTGTGTGGTTGGCTGCTTTTAGTTTTCCAATCTCAAGGTGATGGTACAAATTCCAGAACAGCGAGTACAGAGGTGTCTCTGGATGAATGGAAACCTAAACTCCAATACTTTATGTACAAGTCTTTTGCCGACCTCAGAATCAGTGAGTTGTTCACTATAATAGTAGAATATCCAGACTCTCTTCCTGCAATCCAAGATCTTAAGGAGTGCTTAGAAGTGACAGACCAAAGAAAAGATCTTATTGTATCTCTTCGAACTGCATTTGAGAGGCGTTTGTTACACCCTGGTGCCAACACATCCGATATCCTGACTCAGTATGTCTCAGCCATCCGAGCCCTGCATGTCCTGGATCCTGCAGGAGTTATTCTGGAACATGTCTGTGCACCTGTTAGACAATATCTCAGAACACGAGAGGATACTGTACGCTGTATTGTGACAAGTTTAACAGACGAAAACAGTACAGAACTTGCAGAGGAGTTAATGCGAGGAGATCCTCGAACTGTTGATGAACAAGGTGCTTGTGACAGtgaggatgatgatgagaaCTGGATGCCAGCACCAAGTGATGCAGATCCAGATAAGATATCAAGCAGCAGAAAAACACCAGACATCATAAGcatGCTTGTGAACATATATGGGAGTAAAGACCTCTTTGTTTCCGAGTATCGCACACTGTTGGCTGATCGTATACTTTCATCATTTAACTACGACACTGAAAAAGAGCTTCGTTATCTTGAGCTGCTGAAACTTCGTTTTGGAGAATCCCATTTGCATTTCTGTGAGATAATGCTGAAAGATGTCGCAGACTCCAGACGGATTAATTCTCATATTCAGGCATCAGCTGCACAGAATGACAATACTAACAAGtCTGATACCATTCCACTGACATCCATGGTTTTATCAGCTGTATTCTGGCCTGCATTCCGAGAAGAAAAACTCAAAGTACCTGAAGATGTGCAAAgAGCAATGGATGAATACACCAAGGGGTTTGAAGCTCTGAAAGGCATGCGTACACTGCGATGGAAGCCACACCTGGGCCTAGTGGATCTTGATGTTGAACTAGCTGACCGCACTCTGTCACTGTCTGTCACCCCCGCTCAGGCCACTGCTATTATGCACTTTCAAGACAAAGAACGCTGGACTCTAGAGGAGCTAAGCGTCGTAATGCATGTCCCTCCTGGCTTGCTTAGAAGACGTTTGGGATTTTGGATAAGTCAGGGGGTCCTCAAGGAAGAGTCTTCAGAGACCTATGTGGTGGTTGAAAAGcaaaaaggacaacagaaaatACCAGAGGTAGTCATGGATGCAGAGGTTGAATCTGTAATGGCTTCTTCACAGGATCAAAGAGAAGAGGAGCTACAGGTCTTTTGGTCATACATTGTTGGCATGCTAACAAATCTGGAGAGCCTACCACTAGACAGAATACATTCCATGCTGCGCATGTTTGCTATGCAGGGACCCTCCTCCAGCCAGTGCAGTGTAGATGATCTAAGAAGGTTCCTTGATCGCAAAGTTAAGGACCAGGAATTACAATTTGTAAATGGCTTTTACAGATTACCTAAATCAAGCAGATAA

Transcript

FUN_024112-T1

CCCCGACCCCCTTGGCATTTCCAATGACCAGCCATGGGGTGGGtatagatattttctggaaccagaCTTTGGCCTATTATATTTCAGCTAATACATGTAGTTTATGCCAATATGGGGAGTTGGATAGGGGCAGGGTCCTGACAGAAAGAAGGAAGAAAAGGGTGTGTCaggggtacgggaagcgggaaaaGCGGGGGAAGGAAGTGGGATTTCCAAGGTAGCAGGAAGTGGGAGAATTAGGGAAAAATTGCACAATCTTAAATAAAACTTTGGGGGACCAGTACCAGGATAGAAGGTAGGTAtagatagcgctatccaacttttgaacaactgaggCCTGGGGCATTATTCAGACAATCAAAATACCTAAAgaggaaattttaaaattttgttgtcTGATTCACAGCATCATGGGAAGCCCTGATCAGAGGGGACTGAGTACCAGCAtccaaacgaaaacaaaatggcggctggcGGGAATGTTGAAGTCGTTTGGAGCAATCTTATAAACTACCTTTCGCCCACGGCTCCCCAGCTTCTTGGAACCTTAGAGTCGTTGGAACAGCTGAGGCAATCGCCGCGGATGTTCTcccgcttacgagagtggttcTTAGAAAACTGTCAGAAAGATTTAAAAGATGAAATTCGACCGCGATTTTGGTCTCATTTCCAAAAGAGCGAGGTTGAAGCAAAGACATACAATACCCTGCTCACTGCTGTTAGTGAGCTTTACAAAAGTGTATTGGCATACAAACCATTTGTGGAGCTACTACAGTCCTTGACAGGATCATTACCACTTAGCAATCTGGAGTTGCAGTTTGAAGGCTTAGTGAGGGCTGTTGTCTTTTGCGATGTTCCTGAACAGTTTAAAAGTTTAGTGCATGCTTTCTACAGCCATGCATTTCAAGCATATCAGTCCataaacaaaaaggaaaatggaCTAATGGATACATCAGGTGCATCTTCAATGAGTGTCGAAGAAGACAACGAAGCAGCAGAGGATGATGATGTTGAATCTCTCATTTGCGCTGGCTGTGCAGAAGAGAAGGACAGTTGTCACTGCACAAAGATCATTGAAGTATTTTCACAATTCAACTCACAACTTCACTCTCTTGGATTGATGAAAAAGGTTGCTGAACCAGCATTCCTGTCAGTCATTCATAGAGAGATTCAAAGAAGAATCAAAGAAAAGTGCAAAGGCGAGTTTGAGAGTTCTTTCCTTGCACCCTTGTTACACTGGATTGATATTGAGTTGTGTGGTTGGCTGCTTTTAGTTTTCCAATCTCAAGGTGATGGTACAAATTCCAGAACAGCGAGTACAGAGGTGTCTCTGGATGAATGGAAACCTAAACTCCAATACTTTATGTACAAGTCTTTTGCCGACCTCAGAATCAGTGAGTTGTTCACTATAATAGTAGAATATCCAGACTCTCTTCCTGCAATCCAAGATCTTAAGGAGTGCTTAGAAGTGACAGACCAAAGAAAAGATCTTATTGTATCTCTTCGAACTGCATTTGAGAGGCGTTTGTTACACCCTGGTGCCAACACATCCGATATCCTGACTCAGTATGTCTCAGCCATCCGAGCCCTGCATGTCCTGGATCCTGCAGGAGTTATTCTGGAACATGTCTGTGCACCTGTTAGACAATATCTCAGAACACGAGAGGATACTGTACGCTGTATTGTGACAAGTTTAACAGACGAAAACAGTACAGAACTTGCAGAGGAGTTAATGCGAGGAGATCCTCGAACTGTTGATGAACAAGGTGCTTGTGACAGtgaggatgatgatgagaaCTGGATGCCAGCACCAAGTGATGCAGATCCAGATAAGATATCAAGCAGCAGAAAAACACCAGACATCATAAGcatGCTTGTGAACATATATGGGAGTAAAGACCTCTTTGTTTCCGAGTATCGCACACTGTTGGCTGATCGTATACTTTCATCATTTAACTACGACACTGAAAAAGAGCTTCGTTATCTTGAGCTGCTGAAACTTCGTTTTGGAGAATCCCATTTGCATTTCTGTGAGATAATGCTGAAAGATGTCGCAGACTCCAGACGGATTAATTCTCATATTCAGGCATCAGCTGCACAGAATGACAATACTAACAAGtCTGATACCATTCCACTGACATCCATGGTTTTATCAGCTGTATTCTGGCCTGCATTCCGAGAAGAAAAACTCAAAGTACCTGAAGATGTGCAAAgAGCAATGGATGAATACACCAAGGGGTTTGAAGCTCTGAAAGGCATGCGTACACTGCGATGGAAGCCACACCTGGGCCTAGTGGATCTTGATGTTGAACTAGCTGACCGCACTCTGTCACTGTCTGTCACCCCCGCTCAGGCCACTGCTATTATGCACTTTCAAGACAAAGAACGCTGGACTCTAGAGGAGCTAAGCGTCGTAATGCATGTCCCTCCTGGCTTGCTTAGAAGACGTTTGGGATTTTGGATAAGTCAGGGGGTCCTCAAGGAAGAGTCTTCAGAGACCTATGTGGTGGTTGAAAAGcaaaaaggacaacagaaaatACCAGAGGTAGTCATGGATGCAGAGGTTGAATCTGTAATGGCTTCTTCACAGGATCAAAGAGAAGAGGAGCTACAGGTCTTTTGGTCATACATTGTTGGCATGCTAACAAATCTGGAGAGCCTACCACTAGACAGAATACATTCCATGCTGCGCATGTTTGCTATGCAGGGACCCTCCTCCAGCCAGTGCAGTGTAGATGATCTAAGAAGGTTCCTTGATCGCAAAGTTAAGGACCAGGAATTACAATTTGTAAATGGCTTTTACAGATTACCTAAATCAAGCAGATAACAGTAAACAGACTGGGGATAGAGCacagaggcaatgtccatgctGGGGCAATATGTGGAATGGGTCGTCTAATCAGCTGAAAAAAACCAATTTGGAAGTGGCCCACTGTCTGTTCAAACTacagttaataaaagaaactgGTTATGAAGCTCGGCAAAGTCCTTTGCTTTATGTGTCCGTTTTTAACCTTGACGGAGCCCAAACAAAATTAATAGCTTTTGAATTTTGTGAGAACAACTAACCAATAGAAATgttactgttaagttattcagccatagagTGTGATATTGTACAAAAGATTGTGCATGGTTTTgtggtactttcaacataaattgcattgcccttgttatggcctttgaaacttgcaaagtttcataaccagtcccccAAGTAACTATGTTCAAACCTTTAAAGAATTATCCCTCAAGTTGTAGCAGGTCAGAATCATTTATTAGCATTTAAATATTACATCTTTACATCACTCAAGAATTAATACAAAATAACAAAGGCTGTCAACCTCAAACACTCGAGTGTTACTCCAAAATACTCAAGCTGAATGGATACAGTTAACCCTTCTTTACAGACACCTGACTAtgaaccctttaaaccccaatattaacatccatattctccccaCCATTCTCctcatatttcttatgttactagttgggagaatttgattaaaaatcaagacatttgataattggtgatcatttcctttattctcgtgacctgtatgtttgatcaagtagtaatactgtaaggagaaattagatgcttgtcacta

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08672 all species →	ANAPC2	Anaphase promoting complex (APC) subunit 2	Domain	Interproscan
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR014786 all species →	Domain	Anaphase-promoting complex subunit 2, C-terminal	Interproscan
IPR016158 all species →	Domain	Cullin homology domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR044554 all species →	Family	Anaphase-promoting complex subunit 2	Interproscan
IPR036317 all species →	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45957 all species →	ANAPHASE-PROMOTING COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0007091 all species →	Biological Process	metaphase/anaphase transition of mitotic cell cycle	Interproscan
GO:0070979 all species →	Biological Process	protein K11-linked ubiquitination	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03349	APC2, ANAPC2; anaphase-promoting complex subunit 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.