Gene detail

Detailed information of FUN_024206-T1 in Acropora pulchra

Genomic Location: ptg000018l:3330168...3347459
NR annotation: XP_044175010.1, ATP-binding cassette sub-family E member 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_024206-T1

CATTTGCGCGCGCACTCTCCACTCTCACGTGGCTATGAAACCCATTGCAGTTTTCCGGTGAAAATAGTAGAAATTTTAGTTTTCTTGCGGTAAATTTAAAGCCATGTCTTCTCGACTAAAGCAAAACCAGCAAACGCAGGACAAGCTCACCCGTATTGCCATTGTAAGCTCTGATAAATGTAAACCCAAGCGTTGCCGTCAGGAATGTAAGAAGTGTTGTCCTGTGGTTCGTATGGGAAAATTGTGCATTGAAGTTACACCGGAATCTAAGATTGCACACATTTCCGAATCATTGTGTATTGGTTGTGGGATCTGTTCAAAGAAATGTCCATTTGAAGCAATCACTATCATCAATCTTCCAAGCAACCTTGAGAAGGAAACCACACATCGATACAGCGCCAACTCTTTTAAGCTTCACAGGTTGCCAATTCCAAGGCCAGGTGAAGTGTTGGGATTGGTTGGAACAAATGGTATTGGCAAATCTACAGCACTGAAGATCTTAGCTGGAAAACAAAAGCCTAATCTTGGAAGATATAATAATCCTCCAGATTGGCAGGAAATCCTTCAGCACTTCAGAGGCTCAGAACTGCAGAATTATTTCACAAAGATTTTAGAAGATGACTTGAAGGCAATCATTAAACCACAGTATGTGGACCAGATTCCAAAGGCTGTTAAGGGAAGTGTACAGTCAATTCTGGACAGAAAGACAGAATTGGACAATCAAGAACACATATGTGAACAGCTGGATCTAATGACTGTACTTGATCGCAATGTAGATGAACTCTCAGGAGGGGAGCTGCAGCGTTTTGCTTGCGCTGTGGTGTGCATTCAGAAGGCTGATATTTACATGTTTGATGAACCATCAAGTTACTTGGATGTCAAGCAGCGTCTTAAATGCGCCTTGACAATACGGTCTCTTCTTAATGACGAAAGGTACATTATTGTCGTGGAGCACGATCTGAGCGTGTTGGACTATCTCTCTGACTACATTTGCTGCCTCTATGGAGTTCCTGGCGCTTACGGTGTGGTTACCATGCCCTTCAGTGTACGAGAAGGAATCAACATTTTTCTGGATGGTTTTGTCCCCACTGAGAACCTGAGGTTTAGAGAGGCTTCGTTGGTTTTCAAAGTAGCAGAAACAGCTGACAAGGAAGAGGAAATAAAGAGGATGCGCAGATACAAATATCCTTCAATGTCAAAACAGCTGAAGGATTTTCAACTAAAAATCGATGGAGGCGAATTCACAGACTCAGAAATCATTGTTATGTTGGGAGAAAATGGAACTGGCAAAACTACTTTCATCCGCATGTTGGCTGGAAAGCTTCCATCAGACAGTGAAGAGCATGTGCCCGAAATGAATGTCAGCTACAAGCCGCAGAAAATCAGCCCCAAATCGCAGAACACTGTGCGCTTCCTCCTCCATGAAAAGATCCGTGATGCTTACGTGCATCCTCAGTTTATCGCTGACGTCATCAAGCCACTGCAGATAGAGCAGATCATGGACCAAGAGGTTCAAAACTTGTCTGGTGGTGAGCTTCAACGAGTTGCTTTGACCATATGCCTTGGGAAGCCGGCTGATGTATACTTGATTGATGAGCCCTCGGCTTATCTAGACTCTGAACAGCGTCTTGTCGCTGCAAAAGTCATAAAACGTTTCATCCTTCACGCCAAAAAGACTGGTTTTGTCGTCGAGCATGATTTCATCATGGCAACCTATCTGGCAGACAGAGTTGTGGTGTTTGAAGGCGAACCGTCGGTTAAGACTCAAGCCAACAGTCCTCAGACACTGCTAACCGGTATGAACAAGTTTCTTCGATCCCTGGAGATTACCTTCCGGCGTGACCCGTCCAACTTTCGGCCGCGGATCAACAAAATGCATTCAGTCAAGGATTCCGAGCAAAAGCGAGCAGGCAATTACTTTTACCTTGAAGACTGATGAGCTTTAGTCCTTGCCACGAAAAACAAAAGCAAAACAAAAAACACAACAAAAGCAAAGAACAAAAACAAAAAAGGGCGAGGAACGCAGCTCTCCAAGGAATTGAAGATTTGAAAGATCGAAGAAAGGGAAAGCTTCAAATTACTTGAAGCGAAATCTTTTTGGAAATGCTTTGACTTCAGTCATATATTTATCATCTTCCTCACCCCATGATTTTAAATTTCCCTCCTTACAATCTAGAGAATAGGGAGCTTAAGCAACCACGTCGACGAGGGCAATAAGAACGTTACAAATGTGCATATTTGGCAATGAAAAAAAATAATTTTGCACGCTTTGCAGGTGTTTTTTTGTTTCATTTTTGGACATCTCGCTGACGTTCACGTTCTTTCTACGGCGTGAAATGACCTGTTTTGCAGTTGTGTGGACGACGAGAGCACATGATGACAAATGGTAATTTTTATCTTCTTATCTCAGATCTCTAAAGCTATGGTTTGCAAGCGTAATGACCTTGAAAGGTTTCGTGAGCTTTGTACGTGCGATTTTCATATTTGTACATTTCACGGCCGTTCTATCCACGACGTGAAATGACATGTGTAGACGTGTCGTTTTCATTTGGTTTCCTTACTATCACCAAACCACTCATACCAATTAAATACCGGGAGGGTTAGCACACAATTTGAAAGACGAGCGACTTAGAATAACGGAGAAATGATTGCAGAAACGCGAAGTTACATTTTCAGATAATGTTCTTGCTGTCGTCGACATCGTGTTATCTTATACTCCCTTCACTCAACTGAATCTCTGTATCGTACATAGTATGTTCTTAAGTCACCCTTACATTTTATGTAGACGTTCTTCGAGCAGTCCCTCTAGTATCCTCTGTTAACCTCTTTGAGGTCTTTGGCTAAAATGTCGTCTGCGAGGAGACGGTTTTCGCGTGCGTTGTTTTGGCGCGCCACTCGAGACGGGATTTGCGATACTCCAAAAAAAATAATAGTGATGGAAATATAATAGTAAATTTAAGTGAACAAAAGAACCATCGCGTTGTAATCAGTTTTACCCGATTTCTGTTCTACACTGTATTTGTTATCTCAAGCTCTCCACTCCTTTTAATTGAAGACGATGGTGAAAATAAGGTTGCAAATTTGCATATTTAACAATGAAGAAAATGTTTGGTGCCATTTTCATTTTTGTACATTTCACGGCCGTTCTGTCCACGACGTGAAATAACACTTGTAGATGTGTCGTTTTAATTTTTTCCCTTACCATCACCAAACCACTTATACTAATTACATTCCGGGAGAGTTAGCACACAATTTGAAAGACGAGCGACTTAGAATCATCGAGAGATGATTGCAGAAACGCGAAGTCACATTTTCAAGTTAGGTCACGCCTCATTTACACTAGCAAGTTTTCCTTGACAAGTCCGCTTGTCAAGGAAAACTTGTTGACTGTACACACTAGCAAGTTCTCCTTGACAAGTTTTCCTTGGTAGTGTAAATGGAAAATATGACAAGTGCACTTGACAAGTAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61221	ATP-binding cassette sub-family E member 1 OS=Homo sapiens OX=9606 GN=ABCE1 PE=1 SV=1
P61222	ATP-binding cassette sub-family E member 1 OS=Mus musculus OX=10090 GN=Abce1 PE=1 SV=1
Q9VSS1	Protein Pixie OS=Drosophila melanogaster OX=7227 GN=pix PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006330 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00037 all species →	Fer4	4Fe-4S binding domain	Domain	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF04068 all species →	RLI	Possible Fer4-like domain in RNase L inhibitor, RLI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013283 all species →	Family	RLI1	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR034348 all species →	Domain	RLI, domain 1	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR007209 all species →	Domain	RNase L inhibitor RLI-like, possible metal-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19248 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000054 all species →	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06174	ABCE1, Rli1; ATP-binding cassette, sub-family E, member 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.