Detailed information of FUN_024232-T1 in Dendrogyra cylindrus

Genomic Location: contig_50:2301331...2314275
NR annotation: CAH3155184.1, unnamed protein product [Pocillopora meandrina]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
D3ZXK7E3 ubiquitin-protein ligase RNF123 OS=Rattus norvegicus OX=10116 GN=Rnf123 PE=1 SV=1
A0A5F9C6I2E3 ubiquitin-protein ligase RNF123 OS=Oryctolagus cuniculus OX=9986 GN=RNF123 PE=1 SV=2
Q5XPI4E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens OX=9606 GN=RNF123 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002483 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00622
all species →		SPRYSPRY domainFamilyInterproscan
PF15794
all species →		CCDC106Coiled-coil domain-containing protein 106FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035773
all species →		DomainRing finger protein 123, SPRY domainInterproscan
IPR045129
all species →		FamilyE3 ubiquitin-protein ligase RNF123/RSPRY1-likeInterproscan
IPR043136
all species →		Homologous_superfamilyB30.2/SPRY domain superfamilyInterproscan
IPR003877
all species →		DomainSPRY domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR031591
all species →		FamilyCoiled-coil domain-containing protein 106Interproscan
IPR001870
all species →		DomainB30.2/SPRY domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13363
all species →		RING FINGER AND SRY DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0051603
all species →		Biological Processproteolysis involved in protein catabolic processInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_024232-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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