Gene detail

Detailed information of FUN_024307-T1 in Colpophyllia natans

Genomic Location: contig_48:2454900...2455595
NR annotation: XP_020628139.1, uncharacterized protein LOC110065347 [Orbicella faveolata]
Species Colpophyllia natans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01QR6	Large ribosomal subunit protein bL9 OS=Solibacter usitatus (strain Ellin6076) OX=234267 GN=rplI PE=3 SV=1
C1F902	Large ribosomal subunit protein bL9 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161) OX=240015 GN=rplI PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01281 all species →	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	Domain	Interproscan
PF03948 all species →	Ribosomal_L9_C	Ribosomal protein L9, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020070 all species →	Domain	Large ribosomal subunit protein bL9, N-terminal	Interproscan
IPR036791 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Interproscan
IPR000244 all species →	Family	Large ribosomal subunit protein bL9	Interproscan
IPR036935 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Interproscan
IPR020069 all species →	Domain	Large ribosomal subunit protein bL9, C-terminal	Interproscan
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21368 all species →	50S RIBOSOMAL PROTEIN L9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02939	RP-L9, MRPL9, rplI; large subunit ribosomal protein L9	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.