Gene detail

Detailed information of FUN_024367-T1 in Acropora pulchra

Genomic Location: ptg000018l:5455007...5474546
NR annotation: XP_044177403.1, TBC domain-containing protein kinase-like protein [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_024367-T1

ATGGGCACGCTTGGTGAAGCGCAGATTGGAATTTCTACCTTCTTTCCTTCTCCGCATCCGTCTGGTCAGTGTGGAACTAATGGACTTCCACTCACACCAAACTCTATTGTCATCTTAGGCCGATTTCAACACGTAAAGAGTCTTTACCACGAAAATGTTTGCCAATATCTTGATATCACCAGAGTGAAAAATGAGAGGCTCATTGTTGCTGAGGAATTTTTTTCTGAAAACTTGAAAACAGAATTGAAGAGTGGGAAACACTTCAGTTGGAGTGAAATCAGGCATATTGCTTTTGAGGTACTTCATGGTCTGTCGTTCTTAAATGCTCATGGAATAGTCCACAGAAATTTGTCACTGGGAAACATTTGTCTTACAACTAAGGGCCAAATCAAGATATCCAAGAGTGGTTTATATTACATAACAGGGTTTGGAGCACATGTTGCTTTCCCTGTGGGCTGTCCAGAATTTATGGCTCCTGAAGTCATTTTGTCAGGTCATGGACTTTCTCCTTTGTTTGGACCATCTGGACCTAAGGTGGATGTTTGGTCCTTAGGGATGATTCTCATCTCTCTGATTTTGGAAGGAGGATTGTGGGCAAGTCTGTCAGAGAGCCATGATGTGAAGAAAATTTTCTCAAAAATACTCTTTCTTGCAAAGTCTTCTAGAGATTCTTCGCGGAATTTTCTTGAACTTGTTTTTGAGGATCATCAGGCATCACAAAGGCTCAAAGAGATTCCACCAGACTTGATTTCATTCCTTAACATTTGTCTGAGTACAGATGTCACCAAAAGACCTGCACCCATTGCATTATTACATCATGACGTGTTCTCTGGATTTGATAAAACTAAGATAAAACTTGATAATGGGTTCCAAAAATTTCCTCCAGTGTTTGATTTGCGTGATCTAGAAGTCAGAGATTATCACTTGAATGATGACTTCTCTTCAGATGGGGATGATGAGGAGGATCTCTTGTCTGAAAGGCCTCTACATGAGGTCTTCCATCTTTGGACTCTGGCAGGCGGGGATCTGGAGGGAGAGCTGAAGAAATGTGGTCTCATTAAAGCGAAACCCCCAATAATGTCTCTTCCAATCCTTTTGCTAAAAAATGGAGAGGAACTTGGAATGGAGAAAGACCGATTAATGTTATTGGACGCGACAGCAGTCCCAGCATCTCTGACACAGCTTAGAGAGAGATTAAAAAATGTGGATCCGTCCGCCTATTTCCCACTCATCGAAGAGGACGATCCATCTTCAAGATACGCTCTTCTTGACACCGCTGATCTGCCACTTACAATTAGAGAGACTACAGTTGATTATCAGTTTCACAGAATTGTCCTTTTTCAAAGACTGTTGGAGGGTTATCCTTACACAAGAGATCGTATTGTCAGAGAAGCGAGGATAGACATTCCGCCCTTACTCAGAGGAAAGATCTGGGCTGCATTATTAGGCGTTCAGGGCGATATTCAAGGCACATATGACGCCATAGATAAGGAGTCATTCACCCAAACGGACAGACAGATTGAAGTTGACATTCCTCGATGTCATCAGTATGATGCTCTTATGTCTTCTCCTTCTGCTCACCGCAAGTTTAAGCGTGTCCTCAAAGCCTGGGTGGTGTCACACACCGACTTAGTTTACTGGCAAGGTCTGGATTCTCTGTGCGCCCCTTTCCTTTCACTTCACTTCAACGACGAAGCTCTCGCATTCGCCTGCTTAGCGGCTTTTATTCCCAAGTACCTGCACAACTTCTTCTTGAAGGACAATTCGGCCATCATTCAAGAATATCTAGCAGTTTTTTCTCAGTTGATTGCATTTCATGATCCTGAACTGTTTAACCATCTTGGCGAGTCTGGCTTTATTCCCGAGCTATATGCAATACCTTGGTTTCTCACGATGTTCTGTCACGTGTTTCCTCTTAAGAAAATCTACCATCTATGGGACTCACTGTTGCTAGGCAACTCATCATACCCACTCTGCATTGGGGTCGCTATATTGGAACAGTTGCGGGATCAACTTCTATCGTTTGGATTTAACGAGTGCATCCTTCTCTTCTCCGATATGCCTGTCGTTGACATGGACCGAGTGGTGCGGGACGCTAAGCGGGTTTTCTGCAACACTCCGCGGACAGCTTCAATGAGGCTACACGACAGACGTTTTGCTGACCCCAACACTAAGCATGAAAAGGAATTTATCCCTCTTGCTCAGCTCAAGTCTGAGGTATGCCCTCGTATATCCGCGCAAGACTTGCTAAGTATCTGCGAAATCAACGGCGAGGGAGGCACAGGGACATCACCAAAGCGCAAGCGTGGCCTCGTTGTGGATGTGAGGCCAACAGACGAATTTGCTTGCGGTCAAATCCCAGAGAGTATAAACATTCCTTACAATCAAGCGTTCCTAGAGGAGGGCGGCTTAGCACCTTCAGCTGCTGCAAACACTCTAAATAGCTTCAAAGGAAGAGTGATCATTGTTGTAGGAAGTCGTGCAAACTATCCTGCTAAGGTTGCTGCAGAGCTTGTCCAGCTAGGGTTCTCAAGAGTGTGTGTTTTGGAAGAACCTGGACTGACAACTCTTCGTACCCAAGGAAACCTCACAGTTCCTACATGA

Transcript

FUN_024367-T1

GCCAAAGCTAAAGTCTGGTTACCAAGTTGGGATCAAAACAAAATTGAATGCCCGACCAAATTTTATCACAGATTTAAGAGATGTAAACACTTTCAAAAGGGATAAACTAGGATCTCCAAATAACAACAGAGAATGGGCACGCTTGGTGAAGCGCAGATTGGAATTTCTACCTTCTTTCCTTCTCCGCATCCGTCTGGTCAGTGTGGAACTAATGGACTTCCACTCACACCAAACTCTATTGTCATCTTAGGCCGATTTCAACACGTAAAGAGTCTTTACCACGAAAATGTTTGCCAATATCTTGATATCACCAGAGTGAAAAATGAGAGGCTCATTGTTGCTGAGGAATTTTTTTCTGAAAACTTGAAAACAGAATTGAAGAGTGGGAAACACTTCAGTTGGAGTGAAATCAGGCATATTGCTTTTGAGGTACTTCATGGTCTGTCGTTCTTAAATGCTCATGGAATAGTCCACAGAAATTTGTCACTGGGAAACATTTGTCTTACAACTAAGGGCCAAATCAAGATATCCAAGAGTGGTTTATATTACATAACAGGGTTTGGAGCACATGTTGCTTTCCCTGTGGGCTGTCCAGAATTTATGGCTCCTGAAGTCATTTTGTCAGGTCATGGACTTTCTCCTTTGTTTGGACCATCTGGACCTAAGGTGGATGTTTGGTCCTTAGGGATGATTCTCATCTCTCTGATTTTGGAAGGAGGATTGTGGGCAAGTCTGTCAGAGAGCCATGATGTGAAGAAAATTTTCTCAAAAATACTCTTTCTTGCAAAGTCTTCTAGAGATTCTTCGCGGAATTTTCTTGAACTTGTTTTTGAGGATCATCAGGCATCACAAAGGCTCAAAGAGATTCCACCAGACTTGATTTCATTCCTTAACATTTGTCTGAGTACAGATGTCACCAAAAGACCTGCACCCATTGCATTATTACATCATGACGTGTTCTCTGGATTTGATAAAACTAAGATAAAACTTGATAATGGGTTCCAAAAATTTCCTCCAGTGTTTGATTTGCGTGATCTAGAAGTCAGAGATTATCACTTGAATGATGACTTCTCTTCAGATGGGGATGATGAGGAGGATCTCTTGTCTGAAAGGCCTCTACATGAGGTCTTCCATCTTTGGACTCTGGCAGGCGGGGATCTGGAGGGAGAGCTGAAGAAATGTGGTCTCATTAAAGCGAAACCCCCAATAATGTCTCTTCCAATCCTTTTGCTAAAAAATGGAGAGGAACTTGGAATGGAGAAAGACCGATTAATGTTATTGGACGCGACAGCAGTCCCAGCATCTCTGACACAGCTTAGAGAGAGATTAAAAAATGTGGATCCGTCCGCCTATTTCCCACTCATCGAAGAGGACGATCCATCTTCAAGATACGCTCTTCTTGACACCGCTGATCTGCCACTTACAATTAGAGAGACTACAGTTGATTATCAGTTTCACAGAATTGTCCTTTTTCAAAGACTGTTGGAGGGTTATCCTTACACAAGAGATCGTATTGTCAGAGAAGCGAGGATAGACATTCCGCCCTTACTCAGAGGAAAGATCTGGGCTGCATTATTAGGCGTTCAGGGCGATATTCAAGGCACATATGACGCCATAGATAAGGAGTCATTCACCCAAACGGACAGACAGATTGAAGTTGACATTCCTCGATGTCATCAGTATGATGCTCTTATGTCTTCTCCTTCTGCTCACCGCAAGTTTAAGCGTGTCCTCAAAGCCTGGGTGGTGTCACACACCGACTTAGTTTACTGGCAAGGTCTGGATTCTCTGTGCGCCCCTTTCCTTTCACTTCACTTCAACGACGAAGCTCTCGCATTCGCCTGCTTAGCGGCTTTTATTCCCAAGTACCTGCACAACTTCTTCTTGAAGGACAATTCGGCCATCATTCAAGAATATCTAGCAGTTTTTTCTCAGTTGATTGCATTTCATGATCCTGAACTGTTTAACCATCTTGGCGAGTCTGGCTTTATTCCCGAGCTATATGCAATACCTTGGTTTCTCACGATGTTCTGTCACGTGTTTCCTCTTAAGAAAATCTACCATCTATGGGACTCACTGTTGCTAGGCAACTCATCATACCCACTCTGCATTGGGGTCGCTATATTGGAACAGTTGCGGGATCAACTTCTATCGTTTGGATTTAACGAGTGCATCCTTCTCTTCTCCGATATGCCTGTCGTTGACATGGACCGAGTGGTGCGGGACGCTAAGCGGGTTTTCTGCAACACTCCGCGGACAGCTTCAATGAGGCTACACGACAGACGTTTTGCTGACCCCAACACTAAGCATGAAAAGGAATTTATCCCTCTTGCTCAGCTCAAGTCTGAGGTATGCCCTCGTATATCCGCGCAAGACTTGCTAAGTATCTGCGAAATCAACGGCGAGGGAGGCACAGGGACATCACCAAAGCGCAAGCGTGGCCTCGTTGTGGATGTGAGGCCAACAGACGAATTTGCTTGCGGTCAAATCCCAGAGAGTATAAACATTCCTTACAATCAAGCGTTCCTAGAGGAGGGCGGCTTAGCACCTTCAGCTGCTGCAAACACTCTAAATAGCTTCAAAGGAAGAGTGATCATTGTTGTAGGAAGTCGTGCAAACTATCCTGCTAAGGTTGCTGCAGAGCTTGTCCAGCTAGGGTTCTCAAGAGTGTGTGTTTTGGAAGAACCTGGACTGACAACTCTTCGTACCCAAGGAAACCTCACAGTTCCTACATGACGTGATCAATGAACGACTTCTCTTGCTGCAATACATGCATCGTCCAGTTCACTTGTGGCTGCAAATAGAGAGATTTAACCGGCGGACTGTAAATTTTAGGTTGAAATCTAGATTCTATTAATAATCAGTTGAACTCGTTTCATCGATTTTAGTCCAATGCTTACTTGCCAGCGAAAGCAAAGGGTTCGAACGAGGGAACTCAGAGGCACAGATTTAGCACTGATTTCGTTCTGACCGCACAAGTGCTTTCCGCAACAAATTCATTCTGTATGCTTGCATGAATAAGTAAAAAGAAAAGTTATGTTTTATTATAGAGGAAAATTATCTTAATTTCATGACAACCAGGAAAAGTTGATATCTTAGAATATGCAAAATTTAAACCAAACTGTTGCATGGAATAAAAGAAAACGCAATAAAGGCGTGTTGCAGTTTGATTCTTAACGCAGGCGGTGTCCCTTAGAGCAGGATAGTCTGGGAATTTTACATAACGTGTTCTTTAGTAAGCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BM85	TBC domain-containing protein kinase-like protein OS=Mus musculus OX=10090 GN=Tbck PE=1 SV=2
Q8TEA7	TBC domain-containing protein kinase-like protein OS=Homo sapiens OX=9606 GN=TBCK PE=1 SV=4
Q5F361	TBC domain-containing protein kinase-like protein OS=Gallus gallus OX=9031 GN=TBCK PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003893 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan
PF00581 all species →	Rhodanese	Rhodanese-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036873 all species →	Homologous_superfamily	Rhodanese-like domain superfamily	Interproscan
IPR001763 all species →	Domain	Rhodanese-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22957 all species →	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17544	TBCK; TBC domain-containing protein kinase-like protein	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.