Gene detail

Detailed information of FUN_024396-T1 in Acropora pulchra

Genomic Location: ptg000018l:5775498...5787347
NR annotation: XP_029195278.2, heart- and neural crest derivatives-expressed protein 2-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_024396-T1

CGATGTTTTCGTTTGCAACGTTCACAGAATGCGATATTTGAGCGGAGACTCAAGCCATTTCTTGAGCAGTCAGAGGACAATCAGTTTGGAAGACATCAGATTTTTCGGGGATTTTTCTCCTCGTTGTAGGTCGTCTAAGAAAATGGAGAAAGTCACTGCAGGCGAAGCGCCTCAAAGACTGAAATCAGAACCACGCGAAGAACATCAACCGAGTGCATCTACAGAGCCAAGTGATGTCCCGCGAGGTTCTGCAAATCGCAAGGAGAGAAAGCGAACTTTAACCATGAACTCAGCATTTGCTGAGCTCAGAGACCATATCCCGAATGTTCCGCCGGACACAAAGCTTTCAAAGATAAAAACTCTTCGGCTGGCAATAAGTTACATCAAGTTTTTAACGGAGATTCTGGAAGAAAGCAACGACGGTAAACCAGGACGGAGCAACAACAACTTCGTGGTCGATTTGGCCCTTCAGAGTGAAGGGAGAGAGAAAAGAAAGAGAGAAAACTTGACCTCATCTTCGAGCCAAGATGCTTCTCAAAGAAAGCGAGGGAGAACTGGGTGGCCACAGTATGTTTGGGCAATGGAGCTGAGGAACTGATACTCCACAGTGAATGTCGCAAATCTTCATGTGGAAGTTTCACGCCTGACGCTGGCGATACATCTATCATCCAAGCAGACGGCGACAAACAAGTTCCGTGGTGATTTATAACATAACGCCTTCCAACTGACGCGAGAGTGTCCTAAGACAAAAAACTGATGCTCGTAAGCCCTAAAATTAAGCTTTGTTAAATTATCGTGTTAGAACTGTGTTAATCTTTAATTTAGGGCATTTAGGACAAAATTTCCAAAGAACGCCAGTCTGACAAGTTTGTCCCGTCCCATTGTGTATATAATGACTCCATTTATCACACCTCGGTGATAGACATTTGTATTGTTTGCGAAATATCGCCACCGAATTTGTCATTTTAACCAGTCGGGAAAGAAATATTAAATCGTTCTTAGAAAAAAAATGAATCTTAGCTGCAAATAGTCCGTTCTTAACTCGTCGAAATTTTAATATCCCTTCGTTATTATTTTATACCACTTTGACTTCCAAATATTACATACTTAAACGAAAGTTCCTCTTTATTTATTTGAGGTCATAAAATGCTTGTTTAAGTTTTCACTACCACGCCGTAAAACGTTAAAGAGACTAGAAAACTACTTATCAGGGGAACTCAGTGTATATTTAGGTATATTTAAGAAAATACGAAATATTTCCAGCTGTTTCAATATCTACTTTGTATTAGCTAGATTACATTCACTTTATAGATTTAATTGATGTTAAGTGCCAAATCATAAATCTAATGAGAAACATTTTGTTACTTTGTTGATTTTGCTCTCGAAAGTTTACTTTATTCTTTAAATGTTATCTTTATCACGGCTTTACATTGAGTATAAAGTAAGCCTTTTTACATTTCTTATTTGGAGGCTGTTTGTGCTATCCTCGTGTTTTTATGCCTTGTCAAGTTTGGTAAAGTTCTGTAATCAAATTAATCTCTAGACAGCTTTCTTCACGAAATACTATTGAAAATGGTTAATCTCTCACCCACGCTTCTCACGTATTCTAAATCGATAAAAGGCTTGCAGGAACTAGGTGGTTTGTGGTTGTAAACGAGCTGGAATTTTCGTTATCACAGCAAAGGTACGGGTGGACTTTTTTAAAATGTTACCTGTGGATCAGCCACCCTATGCAATCACGCTTGCTTTTAAGTTTGTTGATAAGGGGGTGGGGGTAATACATTCAGAGTGGATTCCTTTCTTTCTGGTCGTTGCAGTGTTGTGGCATGAAATTAGATTTACTGCGGGAGTTTCAGAATATTTAATTACCCAGACTCTATATGGTGATTGGCTTGGTGCGACCCAGTGAGTGAGTCAGGTGATTGACTTTTCGAGACAAGAAAGAGTTTGTTGTCCGTGGATGGTGCTAAGCTCCACGCCTCGTTAGGAGCAAAGAAAAACCAAACTGTAAAAGAACAATTGAAACAGCTCGTAACTGATTACATGCATTCGCTGACTAAGCAAGCCTAGCGCCGGCGGATTCCACAATTAACACAGAAAACACTTAAACCGTTCAAAGAAAAACGTCAATTAGCGTCATTGTCGTTAACACGTTTTCGCAGTTCTCTTTTCGCCGTTCAGCCAGTAAGTTTGGTTTCATGAGCTCAATTACGACGACAAAACAATAAAAAATTCAAAAGCAAGTTCTCGTGAGAATGACAAATTTATGATAGGAGCGATCTTGGCCCTTGGTCAGCCCTACTGACGACCTTAAAATGAAGCGCCGTCAATAAGCGTCCTTTTTGTAATACAGTGAATGGGACTTAGTCTAGACTGTGTTCCTGTCAAAGACCTCGGTAAACGATGCTGCAGGAGCACTGTGCATCTTACGTGCTACGACAAACAATGTTGCAACCAAATGACATATAATCAATCGTCTTGTCCAATCCGCGTAGTTGGAGCACAGCCAGGTCAACTTTGAGAACGGTCTAGATTTCGTCTAGACACTTAATCCGGAAACCTTAAAAACAACAACAATAACAACAACAAAAACTGAATTTGGCCAAAATCCAGCAACCTTGACCTCAGACTTGGCTAATTTGAAGTTAGTTTTGGTCAAGAATCAGGTTTAGGGAAAATCACATCACCTCAGAAGACTTGGATTAAGTGTAATATGATGGCTGGTTCTTGGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90690	Heart- and neural crest derivatives-expressed protein 2 OS=Gallus gallus OX=9031 GN=HAND2 PE=2 SV=1
P57101	Heart- and neural crest derivatives-expressed protein 2 OS=Xenopus laevis OX=8355 GN=hand2 PE=2 SV=1
P61296	Heart- and neural crest derivatives-expressed protein 2 OS=Homo sapiens OX=9606 GN=HAND2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002965 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050283 all species →	Family	E-box Binding Transcriptional Regulators	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23349 all species →	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032502 all species →	Biological Process	developmental process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18486	HAND2; heart-and neural crest derivatives-expressed protein 2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.