Detailed information of FUN_024437-T1 in Siderastrea siderea

Genomic Location: contig_23:238720...263028
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12496
all species →		BNIP2Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2FamilyInterproscan
PF13716
all species →		CRAL_TRIO_2Divergent CRAL/TRIO domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022181
all species →		FamilyBcl2-/adenovirus E1B 19kDa-interacting protein 2Interproscan
IPR036865
all species →		Homologous_superfamilyCRAL-TRIO lipid binding domain superfamilyInterproscan
IPR001251
all species →		DomainCRAL-TRIO lipid binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48323
all species →		OS01G0948300 PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_024437-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K18449PRUNE2, BMCC1; prune homolog 2-Signaling proteins-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_024437-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
55TPM > 0
7Conditions
302.0Max TPM
51.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 11 41.20 181.51
holobiont · low.pH Control.temp 20 12 74.36 202.98
holobiont · control.pH_high.temp 20 13 49.68 213.86
holobiont · control.pH Control.temp 19 13 47.68 301.98
Whole organism 4 4 32.41 34.66
unannotated 1 1 21.98 21.98
live coral tissue/skeleton 1 1 25.88 25.88

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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