Detailed information of FUN_024475-T1 in Acropora pulchra

Genomic Location: ptg000018l:6800865...6805190
NR annotation: XP_044176732.1, uncharacterized protein LOC114969848 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P20965Polyadenylate-binding protein 1-A OS=Xenopus laevis OX=8355 GN=pabpc1-a PE=1 SV=3
F1QB54Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=pabpc1a PE=1 SV=1
Q6IP09Polyadenylate-binding protein 1-B OS=Xenopus laevis OX=8355 GN=pabpc1-b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001523 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097
all species →		zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF00658
all species →		PABPPoly-adenylate binding protein, unique domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002004
all species →		DomainPolyadenylate-binding protein/Hyperplastic disc proteinInterproscan
IPR036053
all species →		Homologous_superfamilyPABC (PABP) domainInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR018957
all species →		DomainZinc finger, C3HC4 RING-typeInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46276
all species →		E3 UBIQUITIN-PROTEIN LIGASE UBR5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034450
all species →		Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0090263
all species →		Biological Processpositive regulation of canonical Wnt signaling pathwayInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_024475-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP