Gene detail

Detailed information of FUN_024504-T1 in Colpophyllia natans

Genomic Location: contig_49:2205988...2210638
NR annotation: XP_020623055.1, uncharacterized protein LOC110060612 [Orbicella faveolata]
Species Colpophyllia natans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_024504-T1

CATAcctaaaaaaatagtttgttcCGCTATAAAAGCGAGTGACTCAGCGCTTTCTTCTATCGCGTCACGAGAAAAATATAGCTCGTTGTTTTACTTGTCCACTTGTCTGGATCGAAACGTGTTTCTCACTGCTACACTTACACTAACTGAAAGAGTGTATAAATAATTCTTCTCTTAACAAGATACAGTTTTCTACGATTTCCACGAACGCGAGCAAAAAGCAGAATAGAAAGGATTGGATAACAGACCTTGAAAGAAATTTGCTTTAAGATTTCTACAAGAACTTCTACTGAATTACCCTTCTACTCTAAGCAACAATTAACAAACATGGCAGTTGGAAAGAAATATTTCGACTCTGCTACTCTCCTGCAAGTAACATTGGCCCTGTCTATGATGAGACCAGAGCTTCAAGGATTTGTTGGACAAAATACAACGCCGCCGATGCCGGTGAATCTGGGTTATCCACAAAACTACACCGGAGTGGCCTTCGCTCCCAGCAGCACCAGCAACATGCCGAACTTCCACCTTGTCGCGAAAGAAGCAGCTGCGAATTACAACAATCCTCTGAGCGAGTTTTTGGACTGGCATACAACGGGCCAAAATCAGTTCGACTCGGATTCTATAGCGATGCTCTTCAATGGAGAGAGCCATGCCCCAAGAGAAGCAAGGACTTCGTTCAGCACCGAATTGGAAAGTGGTTACAGTTCGGATGGAGGTCGTTCACCGTCTGCTCTGTCTTCTGTGGGAGGTTCCCCTCAACACGAAGCAAACTTTGGAGATGTGCAAACACCGGAAGCCGATTTTTTCGGTGCTACTGGTTTTACCCCAACAGAAGACGACCTATTGAAATCATTAGACTTTGAACTGGAAGATTTCATTGATCTTGACTCTATTTACGAAGGCCCGCCCCAGAAGAAAGCGTTTTTACCTGAAGAACTTTCTTACCCAAATATCAAGACTGAACCATTACCAAGCCCTGATGACACATATGGCAGAAAGTTCCCTAACTCTCCGCAAGATGTTAATTCACTAAACGATCCCAACCGCAAAAACCCCTTCGAAGAACCGTTCAACTTTGAAGGCTTCCAAGATCAATTCTACGACCCCTTCTCGATCGATTTCGCCCCAACGAACGAGGAATTACAACAACCAGGAACTGAGACGGACACTGTGTTCGATTTTGACTCGTTCGCAGACAATATCGACTATTCTACAGATCTACCCCTAGATTTGTTTGACCCGAGACCGCAGGGGCAAACCCAAGCAGTGGAAAACAAACATGACAATCTCCTTCCCCTTGGCCAGGAGCCCTTGCCAATTTTTTCAGAAGCCACTGCCACAAGAAACGACAGCGGATTTCCTTCTACCGATACGTCACTAACTCCTGTGGTAAATGGAGATTGGCAGGGTGCTGCTCTTCCTCTCTTGACCAGCGCGACAATAAAGCAAGAGAAACCAGAGAGTGGAAGCGTGTTGAGGTCAGCAACTAGTACATCCACCAGGTTCACACCCACAAAAGCCCCTAAGGATTTCACTGGTTCTAAGCCAGCATTTGTTGCTTCTGGAGCATCACGGTTTCCTGCATCAGAAGATGAAATTGTAGACATGAGCATCAGTGAATTCAGCAGCTTTTTGGAAACACTGCCAGATGCAGATGCGCAAAAGGCCAGGGACATACGCAGGAGAGGAAAGAACAAGGTTGCTGCTCGGTTGTGTCGCAAAAGAAAGATTGAACTTGTCAGTGACATTGAGGTTGACATTGAAACTCTGCGAAAGAAGAAGGAGGAAAttatgaaagaaagaaagaaactccAGGCTGAAAATTCCTACTATAGGAATAAAATCAGTGAACTAGAGGATCACCTCTTCCAAAGTTTGAGAGATGAGAGTGGCCAACCGCTTTCATCAAAAGAGTACTCCCTTTTCCAAGGTGCTAATGGAAGCATCTTTGTAGGAAAAAACATAGACACTGAGTCAAGAGGCAAAAAACCAAGTAATAAGAAGTAATACACATGTAGGAAGGATGGTGGTGAAAAATGATCAATAACTTAAATGTTGTTTAAGCTCGGATTTACAGGTCAATTGTCACTCAAAGAAATTTCAATACTCCatcttttttaaaaacattgaGTGGGGTACCAAACACTTCATAGTTTACTGAGGCCTTACAACATTGAAATGTTACCTTTTGTATTCATTCATGGAGAAATAAGGAGACCAAGAATATGTTACTTCTCAGTGGCAAAAAGTTGGGTAATTCAGTACAAATTCACCCATAGGTGTACGAGCCAAGGGTGGCAGTGGGTAGCAGCCCCCCGGCCCCCTTCAGCAACtgaaattatgtgatttttcaGGCAAAATACTCATGATTCAAGCATTGACACTAAAAGTTTCTTGTTACTTTTTTAGTACTTTTTCTTTCAATAAGTTTCGGGTATGCGAGCTCTGATTATCACTGTTTGGAATTATAGCATTATTAGCACTTTTATTAGAGGTGTCAATtgtcaacatttttgtttttcctgcaATTTGAGTGTGTTTGGGTCCCAATTCAACCTTAACGCATTCTGGAATtgcgttaattttttttggtcaaGAAGGTCACCTCCTCCCCAAGGCTAAAGGTGCTCATACATTTGTACACCTGTGAATgcacttgtaaaaaaaaaattcatatttaTTTTGCCGATAGATATTTTGGGGGCTATTTTTGAAAGCAATGTTTCAAGCAGTCATCATTGAGCAGTTATGTGAAGAACTTTTTTTGTCTCATCATTGTATATAAGtcactttaatttcacattCAACCAGAACTCCAAAGTCATCCAAATCATGATGTTCAGTTTAATCACATCTTTCAAACACAACAGAAAATATAAATGTAGTTGGTGGACTTTTTGCCAGGAGTATATTTCCTGAATGGCAAGGTTTTCATGTTCAAGATCAGTGTCTTACGTTAAGAGAAAAACAGTAGCCAATATTGTATTGGTACAAGTGTTTGGTTACGCTGTTAAGAAAAACACACTTTCAAATTTGTATAAAATACTGgctgtaaattttgtaaataatcaTTTATAggttaaataattattgttcaaaactgtttttataattttagtatAGAGTGACTCATCCAAAGAAGGCAGAGTCTTAAGTAGTTTCAGAACTTCCATTTTATGAGGAAataagagttaaaaaaaaaaaaattcattaaatGGAACTTTTAAAGAAAAGTGCATTTGTAGAGTGTTCATTACATTGCAGCTATAGCATACAAGACAAACAGGCAGCATCTTTGGTATTGAAGGGAATTTGTGAAGAAAATGATGCCAGTAGTTATTTATTTGATCAAAAAGGCCTTGCGTGAATCGAACCCAATGGTagtcttgttattgttatttacaGTGGAATTCCTTTCTTTCGAACAACCAAGGGAATtgagaattgttttaaaaatctgGTATTTAGACTGTGGGGAGGGAAATTACTTTGGGTTGGAGGTTTGAGAAATCAAGGTTTTGATCACAAGTAATCGGGATTACTCTGTCCATaaggatattggccaagtttgtTTTCTGTGTATTTAAGACTGGGATGGAGTCAAGGTCTTAACGCGCAAAATTAATAAAAGGATAATATCTGGCCATCTCGACAGAATAAGCTAGCTTGGTCAACTAAGGATTTATTATAGGTATATATTCAAAAAGAACACTATTTTCTTGTGGGGTACAGCAGGTAATCCTGAATGGGCAAGATATCACCATCTTGCCTGATcgagtagccaatcacagtgcaggatttggttcatctcgCCTGCTCACAGAGGTCCAGGAAAttatgaaatagaaataaaaccTCTTCACATTTACATCTTGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16621	Transcription factor NF-E2 45 kDa subunit OS=Homo sapiens OX=9606 GN=NFE2 PE=1 SV=1
Q07279	Transcription factor NF-E2 45 kDa subunit OS=Mus musculus OX=10090 GN=Nfe2 PE=1 SV=1
Q6AYT2	Transcription factor NF-E2 45 kDa subunit OS=Rattus norvegicus OX=10116 GN=Nfe2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008038 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03131 all species →	bZIP_Maf	bZIP Maf transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR008917 all species →	Homologous_superfamily	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Interproscan
IPR047167 all species →	Family	Nuclear Factor Erythroid-derived 2-like	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR004826 all species →	Domain	Basic leucine zipper domain, Maf-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24411 all species →	NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_024504-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.