Detailed information of FUN_024616-T1 in Siderastrea siderea

Genomic Location: contig_23:2732546...2738318
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09764
all species →		Nt_Gln_amidaseN-terminal glutamine amidaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023128
all species →		DomainProtein N-terminal glutamine amidohydrolase, alpha beta rollInterproscan
IPR037132
all species →		Homologous_superfamilyProtein N-terminal glutamine amidohydrolase, alpha beta roll superfamilyInterproscan
IPR039733
all species →		FamilyProtein N-terminal glutamine amidohydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13035
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016811
all species →		Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidesInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0008418
all species →		Molecular Functionprotein-N-terminal asparagine amidohydrolase activityInterproscan
GO:0070773
all species →		Molecular Functionprotein-N-terminal glutamine amidohydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K21286NTAQ1; protein N-terminal glutamine amidohydrolaseEC:3.5.1.122
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_024616-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
34.2Max TPM
2.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 26.77 29.70
unannotated 1 1 27.43 27.43
live coral tissue/skeleton 1 1 34.17 34.17

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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