Gene detail

Detailed information of FUN_024718-T2 in Acropora pulchra

Genomic Location: ptg000018l:10240631...10265505
NR annotation: XP_029179721.2, ATP-dependent DNA helicase DDX11-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_024718-T2

ATGGAAAAGGCACAAAAGCACATAAATGTTGAAGAAAAGAAGACAAAGGGCTGTGATTTGAAGCAATTATCTTTACATCAATCGCCGTCAATCAAACCTGCAGCTGATAAGAAGCCGGTATTTTTTCCATTTCCTTTCTCGCCATACGACATCCAGGAAGACTTCATGCACACTTTGTTTGATGTGCTCAACAATGGAGAAGTGGGAATCTTCGAGAGCCCCACTGGAACGGGCAAGTCATTAAGTTTAATTTGTGGTGCACTGACTTGGTTAAAGAGTTATGAGGAGAGAAGACAAGAAGAGTTAGAGAATGCACTGTCAAGTTCCAATAAAGATGATAATCAAAGGAACATTGCCACAAAAGATGTACAAAGTGACTCTGCATCAACACCAGACTGGGTCATAGAATTTGCTGAAAAACAAGCTAAGCAAGAAAAGGAAGACAGATTGAAGGAAGAAAAGGAAAGGATTGAAAAACAAAGGGCTCAAATTTACAAGCTCAAGAATGAAATAAGACCCGCTTTTGCCATTAAAGGGAAGAGAAAACATAGTGATGACAAGCTAAGTGACTTTCACATGGGGGGAGAATTATTGGAAGACAAAATATCTGAAGAGATCAATGAGGTGTTAGGCAAAACCATTAAAAAAGATCCCGATGCGGATATTGTATTGACTGAGTATTTCAGTGAAGGAGAAGATGCAGGCTCAGACCAAGAGGAAGATAGTGATAAACACGAAGAACCTCACTGCCTAAAGATTTACTATTGCAGTCGAACACACTCACAATTAGCTCAATTTGTGCGAGAGGTGCAAAAGAGTCCCTTTAATGAAAGCACAAGAGTGGTTTCCTTGGGATCAAGACAGAACCTCTGCATCAATGATGATGTTAAGCAACTAAAAAATATAAACAAAATTAATGACAGATGTTTAGAACTTCAGAAAAAAGACAAAGAGAAGAAAACATCTGATGGAGAGAAGGCTCCAAAGAGGAAAAAACTTCTGACAGGGTGTCCTTATTATTCTTACCAACAGTTGCAGAGATTTCGAGACAATGTTTTGATTGACATTAAAGATATCGAACAGCTCGTTTCTATTGGAGAAGAACTTCAAGCGTGTCCTTACTATGGCACAAGATTAGCCATACCTGCTGCACAACTTGTTGTTTTACCCTACAACTTACTTCTTCACAAGTCTACAAGAGAAGCGTGTGGAATAAAGCTTAATGGCAATGTAGTTATCATAGACGAGGCACACAACTTAATTGACACAATCAGCAGTGTCTACAGCGTGGAGATTATGGGTTCTCAGATTTCATGTGCCCATTCTCAGCTAACACAATATCAAGATCGTTACAGGACAAGGTTAAAAGCAAAGAATTTACTCTACATCCAGCAACTCCTGTACATTCTTATCTGCTTCTTAAACTGTTTAGGGGGGAAGGAGATGCTTTCAAATTCCAAAATGCTCTCAACAGCTCCTGCTGAAAATGGTGTTCTCACTGGCCTAAGGGAACAAAGGGTACCAGCGGAAGTGAAATTAAAAACAATCAATGACTTCTTGTTTTCTGCAAAAATGGACAACGTTAACCTTTTTAAGATAAAAAAATACTGCGAGAAGAGCATGATTTCGAAGAAGCTTAATGGATTTGTTGACAAATACCAGTCTGGGCAGGTAGACACAGGGCTTAATGTGGAACAGGCATACCAGAGTAGCAGCTCACCACTACAAATCATTGAGAGCTTTTTAGAAGCACTAACAAATGCTGACAAAGATGGAAGGGTGGTAGTAAATAGACAAGGTCGACTCAGCTGTTCCAGTCTCAAATTTCTTTTGTTGAATCCAGCTGTTCACTTTACCAACATTGTGAGAGAAGCTAGGGCAGTTGTTGTTGCTGGAGGAACCATGCAACCTATGTCAGATTTCAAAGATCAGTTATTTGCTTGTGCTGGGCTTCCTAATGAAAACATAGTAGAGTTCTCCTGTGGTCATGTTATTCCAGCAGAGCATTTATTGGCAGTAGCGCTCGATAGAGGACCATCAGGCAAAGAACTTGACTTCACATATCAATCCCGAGGCTCCACTGAATTGAAAGACGAGTTAGGCCGTCTCCTCGTCAACATTTTTGCTGTAGTTACTGGCGGAGTTGTCTGCTTTTTCTCCTCGTATGACTACGAGGACAAAGTTTATTCACACTGGCAAAAAACAGGCATTCTTGAAAGGATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGACCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGTTCTTCGTGGATAAGAGACAATTCATCGGTATCAAAGATTAG

Transcript

FUN_024718-T2

CAAGTTTTCAATCTTTTGGGATGGAAAAGGCACAAAAGCACATAAATGTTGAAGAAAAGAAGACAAAGGGCTGTGATTTGAAGCAATTATCTTTACATCAATCGCCGTCAATCAAACCTGCAGCTGATAAGAAGCCGGTATTTTTTCCATTTCCTTTCTCGCCATACGACATCCAGGAAGACTTCATGCACACTTTGTTTGATGTGCTCAACAATGGAGAAGTGGGAATCTTCGAGAGCCCCACTGGAACGGGCAAGTCATTAAGTTTAATTTGTGGTGCACTGACTTGGTTAAAGAGTTATGAGGAGAGAAGACAAGAAGAGTTAGAGAATGCACTGTCAAGTTCCAATAAAGATGATAATCAAAGGAACATTGCCACAAAAGATGTACAAAGTGACTCTGCATCAACACCAGACTGGGTCATAGAATTTGCTGAAAAACAAGCTAAGCAAGAAAAGGAAGACAGATTGAAGGAAGAAAAGGAAAGGATTGAAAAACAAAGGGCTCAAATTTACAAGCTCAAGAATGAAATAAGACCCGCTTTTGCCATTAAAGGGAAGAGAAAACATAGTGATGACAAGCTAAGTGACTTTCACATGGGGGGAGAATTATTGGAAGACAAAATATCTGAAGAGATCAATGAGGTGTTAGGCAAAACCATTAAAAAAGATCCCGATGCGGATATTGTATTGACTGAGTATTTCAGTGAAGGAGAAGATGCAGGCTCAGACCAAGAGGAAGATAGTGATAAACACGAAGAACCTCACTGCCTAAAGATTTACTATTGCAGTCGAACACACTCACAATTAGCTCAATTTGTGCGAGAGGTGCAAAAGAGTCCCTTTAATGAAAGCACAAGAGTGGTTTCCTTGGGATCAAGACAGAACCTCTGCATCAATGATGATGTTAAGCAACTAAAAAATATAAACAAAATTAATGACAGATGTTTAGAACTTCAGAAAAAAGACAAAGAGAAGAAAACATCTGATGGAGAGAAGGCTCCAAAGAGGAAAAAACTTCTGACAGGGTGTCCTTATTATTCTTACCAACAGTTGCAGAGATTTCGAGACAATGTTTTGATTGACATTAAAGATATCGAACAGCTCGTTTCTATTGGAGAAGAACTTCAAGCGTGTCCTTACTATGGCACAAGATTAGCCATACCTGCTGCACAACTTGTTGTTTTACCCTACAACTTACTTCTTCACAAGTCTACAAGAGAAGCGTGTGGAATAAAGCTTAATGGCAATGTAGTTATCATAGACGAGGCACACAACTTAATTGACACAATCAGCAGTGTCTACAGCGTGGAGATTATGGGTTCTCAGATTTCATGTGCCCATTCTCAGCTAACACAATATCAAGATCGTTACAGGACAAGGTTAAAAGCAAAGAATTTACTCTACATCCAGCAACTCCTGTACATTCTTATCTGCTTCTTAAACTGTTTAGGGGGGAAGGAGATGCTTTCAAATTCCAAAATGCTCTCAACAGCTCCTGCTGAAAATGGTGTTCTCACTGGCCTAAGGGAACAAAGGGTACCAGCGGAAGTGAAATTAAAAACAATCAATGACTTCTTGTTTTCTGCAAAAATGGACAACGTTAACCTTTTTAAGATAAAAAAATACTGCGAGAAGAGCATGATTTCGAAGAAGCTTAATGGATTTGTTGACAAATACCAGTCTGGGCAGGTAGACACAGGGCTTAATGTGGAACAGGCATACCAGAGTAGCAGCTCACCACTACAAATCATTGAGAGCTTTTTAGAAGCACTAACAAATGCTGACAAAGATGGAAGGGTGGTAGTAAATAGACAAGGTCGACTCAGCTGTTCCAGTCTCAAATTTCTTTTGTTGAATCCAGCTGTTCACTTTACCAACATTGTGAGAGAAGCTAGGGCAGTTGTTGTTGCTGGAGGAACCATGCAACCTATGTCAGATTTCAAAGATCAGTTATTTGCTTGTGCTGGGCTTCCTAATGAAAACATAGTAGAGTTCTCCTGTGGTCATGTTATTCCAGCAGAGCATTTATTGGCAGTAGCGCTCGATAGAGGACCATCAGGCAAAGAACTTGACTTCACATATCAATCCCGAGGCTCCACTGAATTGAAAGACGAGTTAGGCCGTCTCCTCGTCAACATTTTTGCTGTAGTTACTGGCGGAGTTGTCTGCTTTTTCTCCTCGTATGACTACGAGGACAAAGTTTATTCACACTGGCAAAAAACAGGCATTCTTGAAAGGATGAACGCGAGGAAAAAGGTCTTTAGAGAACCAAGAAAAACGAACCAACTCGACCAAGTCCTCTCCTCTTATTCTTCTTACATTAAGAATTCTGCTGACAACAACCCATCTCCAAATGGTGCAGTTTTGTTCTGTGTGGTCGGAGGCAAAATGAGTGAGGGTATTAACTTTTCAGATGACCTCGGAAGATGTATTGTGATGGTGGGTCTTCCGTATCCTAACATGTATTCACCAGAGTTGAAGGAAAAAATGACGTATCTTGACTCCACATTAGGGCCCAAAGCTGGACAAAGTCATTACGAAAACCTGTGCATGAAAGCTGTTAACCAATCAATAGGTCGAGCTATTCGTCACAGAGGGGACTATGCGACGATTCTTCTGTTAGATCAACGCTACGGCTCTGCCAGAATAACGAAAAGTTTGCCTGATTGGATATCAAACAGGCTCCAACATCACACTCGCTTTGGCTCTGCATTTGCCGCCATTCGCAAGTTCTTCGTGGATAAGAGACAATTCATCGGTATCAAAGATTAGGGCAATAGTTGTAATCACAAGAGTTCCGAGGGGGTAGTTTTTCAAAATAGACCCTGTTCTTAAGTCCAACTCTCAAGGTATTTGTGAAAAGAATGTATTTATGTTCTTGAGTTGACTCAATGAAGTGTTTTTTGGGAAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AXC6	ATP-dependent DNA helicase DDX11 OS=Mus musculus OX=10090 GN=Ddx11 PE=1 SV=2
F1R345	ATP-dependent DNA helicase DDX11 OS=Danio rerio OX=7955 GN=ddx11 PE=2 SV=1
A8MPP1	Putative ATP-dependent DNA helicase DDX11-like protein 8 OS=Homo sapiens OX=9606 GN=DDX11L8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003177 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06733 all species →	DEAD_2	DEAD_2	Family	Interproscan
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014013 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	Interproscan
IPR013020 all species →	Family	ATP-dependent helicase Rad3/Chl1-like	Interproscan
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR010614 all species →	Domain	RAD3-like helicase, DEAD	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR006554 all species →	Domain	Helicase-like, DEXD box c2 type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032508 all species →	Biological Process	DNA duplex unwinding	Interproscan
GO:0034085 all species →	Biological Process	establishment of sister chromatid cohesion	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11273	DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1	EC:5.6.2.7	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.