Detailed information of FUN_024790-T1 in Siderastrea siderea

Genomic Location: contig_23:5131162...5146672
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00855
all species →		PWWPPWWP domainDomainInterproscan
PF11467
all species →		LEDGFLens epithelium-derived growth factor (LEDGF) DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036218
all species →		Homologous_superfamilyHIV integrase-binding domain superfamilyInterproscan
IPR000313
all species →		DomainPWWP domainInterproscan
IPR035441
all species →		Homologous_superfamilyTFIIS/LEDGF domain superfamilyInterproscan
IPR021567
all species →		DomainLens epithelium-derived growth factor, integrase-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12550
all species →		HEPATOMA-DERIVED GROWTH FACTOR-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_024790-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25065HDGFL2; hepatoma-derived growth factor-related protein 2-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_024790-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
41.3Max TPM
2.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 33.45 41.29
unannotated 1 1 22.49 22.49
live coral tissue/skeleton 1 1 18.61 18.61

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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