Gene detail

Detailed information of FUN_024828-T1 in Colpophyllia natans

Genomic Location: contig_50:2705957...2712330
NR annotation: XP_020604278.1, monocarboxylate transporter 4-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_024828-T1

aaaaaaccGAGCCTGTCACACAAGTATTACTTGTGTTAAACACAGGGTACAGGCCAGGTGATACCAGATTTAGTCCAGACAGACTATATTGTTGTGGCCGAGGAAAAACGGATTTTACAGTTAAAGGCTGATCAAATTCTTCGATCACTCTCGTTGGAACTTAGAGTGATGAGATGCTTTAATGGACCTTTCTCGGCAAATTCAACGCAATGCGGTAGCATTTGCAGAAAAGAACTTGACAGTCCTTGGTCATGGCTTGTTTGTTTCTGCGCCACATTCTTGATCGTTTTGATGTTTGGCATCTCGCTCAACTTCGGAGTTCTGTTCCCCGTGCTAATGGACTATTTTCAAGAATCGCGGGAACGAACAGCCTGGGTTGGCTCAGTTGGAATAGCATTGGTTTTTACCCTTGGCCCTTTGACCAGTGCATTAGTGAATCAACTTGGTTGCCGCTTAACTGCAATCATAGGTGGATTGTCTTGTGTCAGTGGCCTCTTACTCTCATCTCTTGCTACAAGTATCTACATCCTGTATTTAACTTACAGTGTTTTGTTTGGGTTTGGTGGCAGTTGCCTTTTTGTTTCCTCCTATGTTATAATATCAATGTACTTTGAAAAGAGCCGTTTTATAGCAGCTGGCATTTTAGCATCTGGAACGGGACTGGGTGTTTTTATTGTTGCACCAATCCTGCAAGCCTTGCTAGACTCCTTTGACTGGAGAAAGACCTATCGCATAACTGCTGGGATCATTTcagttgtttgtattttgtgcttAACATTTGATGCCACTGTAACAAATTCAAAGAAGGGAAAAAATGAAGTCCATAATGGGCAAGATGAAGATTTAGAAAATCAAGATGAGCAGGAAGAAGAAACTACAGAAAAGCCAAACAAGTGGATAGACTTGTCTGTGTTTAAGGAGAAGGTGTTTGTTGTTTTGACCCTTTCATTTGCATTGGCCTTGTTAGGACACCACATTCCAAGGTTGCACTTGGTAAAATTTGCAGAAGACCTCCACGTGTCAGCTGATGCAGCTTCAAGACTTTTCGTTTACATCGGTATCACCACATTCATTGGCCGATTCCTCAGCGGTCTCTTGTGTAACATACGTTGTGTAAATCCCTTCTATGTGTTCATGTTTGGTCTCATTCTAGATGGCTCATCTTCAGTCTTTCTTTCTCAAGCTAACAACTATGGTCACCTTATTGCATTTGCCTTTTTCTATGGTTTGGCAGATGGTCTTGTAATAGGCACCTTCAACATCACCATACTCTACTGTGTGGAGCCAAGTAAGAGGGCATCAGCATTTGGTTTATCTGCTCTTTTCTATGGAACAACAATTGCCACTGGTCCTCCTTTGGCAGGTTTTATGACAGATCACCTTCATACATATGTTCCATCTTTTATAATGGTTGCTGCAACAGAATATACAGCAGCAGCATTGCTTCTAATCCTTGTCTATGAGGAAAAGAAGACACAAAATTACAACCCTTCAGACTCTTTAGAGGGCATgcacaatgaccatacagatgTAATTCTGTGCGAGACCCAGGTGTAAATCTCACTAAAAACTTCAAATCCCTTAACTGGCCTAAAGAATCGACAGGCAGTCATAATGTTAAGGCAACATTAAGGCAACATTAAGGCAACATTATTCTTGTTTCTGTAAAACTTATTGTGCTTGGATTACATTAAAACAATATAAAATAAGCTGCCTGTTCATACTTAAGGTTAGGCTCACTGGCATGGCTTAATTGCCTTTTGATACTGACATAAGCAACATACCCAAACAGtctaaagaaaggaaaaaacttCACTACATTTGACAAGTGTGGtatgttattgttattaattcTACTAACAAAAAATGAGAAGAACACCAGTGAAcattgacaattttatttttgaatgcCATGAAAAAGAGAGTTACTTAAATTTCTCAAAAGGTATTCATCACTGTGTATAATGTGATACAATGAAGTAAATGCTGTATATTGTTGAATGGTTTACATtcaagaataaaaatatgcaattttcC

Protein

Uniprot

Uniprot term	Description
P57787	Monocarboxylate transporter 4 OS=Mus musculus OX=10090 GN=Slc16a3 PE=1 SV=1
O15427	Monocarboxylate transporter 4 OS=Homo sapiens OX=9606 GN=SLC16A3 PE=1 SV=1
Q6P2X9	Monocarboxylate transporter 12 OS=Xenopus tropicalis OX=8364 GN=slc16a12 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701	Family	Major facilitator superfamily	Interproscan
IPR020846	Domain	Major facilitator superfamily domain	Interproscan
IPR050327	Family	Proton-linked Monocarboxylate Transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11360	MONOCARBOXYLATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0008028	Molecular Function	monocarboxylic acid transmembrane transporter activity	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08180	SLC16A3; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 3	-	Transporters	ko02000	deepkoala