Gene detail

Detailed information of FUN_024841-T1 in Dendrogyra cylindrus

Genomic Location: contig_53:924989...939182
NR annotation: XP_020606088.1, protein crumbs-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_024841-T1

ATGCAGTTCCGTTTCTTTGCCTACCAGCGTGCATCGTTGACAGGAGGCGTGGCTTTAAAGGCGGGGCAGAGCGTGCTGTCAATCATGACTGTCAACACAAGCGACCCTCAAAAATTTCCAAAATTAAGAATTGATGGAAGGCTGGTGAACTTAAAAGCTCATGTTGGGCAAAAGATGAAGCTTAACAATGGAACTGTTGTACTGGATATCCAAAAGACTTTTAGTTCGCAATCAGACGAGACAGGGGTTGTGCTCATATCATTACAATACGAGTCAGGTGTAACATTAACAGCTGACATACGTCATAGTCCCGTGATGGGCCGTCAGTACCTGAATGTGCTGTACACACCAACAGCAGAGTTTAAAGGCCACACGGAGGGGCTCTGTGGAGTAATGGATAATGAGCCGTCCAATGATTTGAAGGGCCCTGATGGGGAACACTATGACGACCCTATCCAGTTCGCTGCTTCTTGGCGTATAACTGCTGTACACAATAACTCAGGCCTGAGAGGAACATGGTCGTGGAATTCTTCAAACTTTCACAGTGATGACGTCATGGACTCGTCATACAATGACCCTAACTATGTTCCTGTGTACTCTTTAGATGGTATCAGTGACGTCATCATCGCGAAAGCCACTGAAGCGTGCTCGTCGATTGGACTCTCAGATGCAATGCTGAAGAGCTGTATCTATGACGTGGCCGTCACGAATGATACGTCATTGAGTGATCAAGAGACTCTGAAACAAGATTGCCCTAATCAGTGTTCTGGGAAAGGAAGATGTGTCAATGCCACGTGTCAGTGCATGAGTGGCTGGTCCGGTGACAGCTGTGAATTTGGTAACTGCACAGACTGCTCGGCAGAGCATGGGAAGTGTGTGAAAGGATTTTGTGAATGCGAGGATGGCTGGGAAGGTGTTACTTGTGAACAGAAAGCTACGTGCTACAACGTCAACAACTGCACAAGCCCCACCAACGGAATATGTCAGAGGACAGACCGATGTCGCTGTCATGATGGATACATTGGTCGTGATTGCAGCATTATTCCAACTTGCTCCAATGTGTCTGACTGCTCTGGACGAGGCATCTGTATTGATTATGACGTATGTAAATGCCAGAAAGAGTGGACTGGTAAAGACTGTACCCAGTTCTCTTGTGGATCTCTCGACCACTGCTCTGGGCATGGACGCTGCGTAAATCTCTTTAAATGCGACTGTGATGCTGGCTGGGCTGGAGCCAGCTGTGCTCTCCCTGATTGCAAAGGGGTCAATCAGTGTTCTGGTCAAGGAGAGTGTGTGTCAAGTAATACTTGCCAGTGTTACCCAGGATTCCAAGGTGTCAACTGTAGTGACGTAGCAGATTGCGCAAGTCTTGGAAACTGTAGTGGAAATGGTGTTTGTATGCAAGAAAAAGTCGGGAATCTCACTTGCAGATGTTATGCTGGTTTTAGCGGTGCCAACTGCAGCCTTGTCTCGTGCGTTTCCGTGAACAATTGCTCTGGCCATGGTGTATGCGTGGAAGCGAACTTTTGTAAATGTGATCAAGGGTACACTGGGACAGACTGCTCAAACGCGTCCTGTGAAGCTCTTAATTATTGCTCAGGACATGGTGTTTGTACTGGTTATGACACCTGCGCCTGCGATCCTATGTGGCATGGCCCAGCATGCAGTGAAGCCGACTGTTCCAGTCTCAACCATTGTTCTAACAAAGGAGATTGTATCTTGCCTGATACTTGTTCATGTAATCCAGGATACGACGGCGCGGCGTGTAACACGACAGCTAAACCAAACCTTCACGCGCCAGTTTTTACTGCTCCGTTTTACAATGCGTCCCTGTTGGAAAACAGTCCCATCGGAACTAAAGTTCTCCAAGTTCAAGCGAGCGATGCCGACTCAGGACGAAATGCACAGTTCTTCTTTTCGTTGGATGTCACCAATGCTGTGAGTAGTTCTTTCACAATCGACACAATTTCGGGTGAAGTTTTTACGTCATCGGCTTTGGATTACGAAAGCTCTTCATCTCCCCCTCAATTCGAGCTCAAGATCGTGGCTTCAGACAATGGAAGACCAGTCAAGTCAAGCTTTGTGTTGTTGTACATCAACATTCTAGACGTGAATGACCACTGCCCTGTTTTCGAATCGCTTCAATCGAAGTGGCTTAACATATCCCAAGATACCCATCCGGGAACTCTACTGATGGTGATATCCGCTACTGATCAAGACAGCGGGCTCAATGGAGAGGTGAGATATAGCTTGTCACACGCAATTGACCACCAGGGAACTTTTGAAGTGGGGGAAGAAAATGGTAAACTGACGGTTGCCAAGGAACTAGAGGAGAAAGAGTATCGTTTGGTGATTGTTGCACGTGATCTCGGCGCGCCATCGTGCTCACGCCAAACTGACGTCACGGTGAATGTATTTGCTGAGTCAGCAGTTACCGAAGCTCCAAGTAAAATTTCAACAGCAGCTAATACTGAAGGCTCAAATAAGAATACCTCCAcaactgcagcaactgaaacaACTGAAGCAACTGCAACAACTGCAGCACCTGCAGCAACAAGCCCTTCCACCAAGGCGTACACTGAGGAGATTCCAGCCTCCCCGCAGACCTCCAAATGGTTCAAGAGTACTCCGGTTATTATAGGAATTTCCGTTGGAGCGTTCGTTGTTTTTGCTGTCGTTTTAATTATTGTGATCACTGTATCGTGCCGGAAACAGAAGCGTAGGCCTAAAGCGACCCATTGTGCTTCCTCTTGCTCTTTCCCAGGAGCCACGACCGGCATTGCAAACGAGATAGAAATGGAAAATCGAGTTTCCCTTGATGAAACTAAGTGTTAG

Transcript

FUN_024841-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8V7Q1	Protocadherin-like protein OS=Acropora millepora OX=45264 PE=1 SV=1
Q9Y5H8	Protocadherin alpha-3 OS=Homo sapiens OX=9606 GN=PCDHA3 PE=1 SV=1
Q5DRE9	Protocadherin alpha-3 OS=Pan troglodytes OX=9598 GN=PCDHA3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000535 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028 all species →	Cadherin	Cadherin domain	Domain	Interproscan
PF07974 all species →	EGF_2	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002126 all species →	Domain	Cadherin-like	Interproscan
IPR015919 all species →	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR020894 all species →	Conserved_site	Cadherin conserved site	Interproscan
IPR051216 all species →	Family	Teneurin domain-containing protein	Interproscan
IPR013111 all species →	Domain	EGF-like domain, extracellular	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11219 all species →	TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0008045 all species →	Biological Process	motor neuron axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06052	JAG1, CD339; jagged-1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.