Gene detail

Detailed information of FUN_024886-T1 in Dendrogyra cylindrus

Genomic Location: contig_53:1393641...1419338
NR annotation: XP_022801141.1, uncharacterized protein LOC111338862 [Stylophora pistillata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_024886-T1

ATGTTGAATATATCACATTTTCAAACAACGTCTCCATCAGGTGATCCATGCTCGTCTAATCCTTGTCAAAATGGTGGTACCTGCAGCAGTAACTCTGGAATCGGCTTCACGTGCAATTGTCCTTCACTGTACACTGGTGTTAACTGCAGCAAAATTAGTCAAGaatatcgaaatactgaactagaatccaccgaagggatcttctcagtgcagaggagagcatccagctacaactccgtgttgctggctgatttcaccggacgttctacagATTGCCAAGGAGCGCTCGGCATGGAAAATGGTGCAATCCCTGACGGAAAAATTTTTGCGGCTTCTTCGAAGGATACTAACCTAACTGGTCCCAGTCGGGGCAGGTTGAACTTACAAGAACAGGGATCGAAATCAGGAGGCTGGGTAGCTGAAACCAGTAATACTTATCAATGGTTTACTGTTTACTTTGATAAAGATTACACCATAATAACAGGCGTGGCAACACAAGGGAGACAGGACGAAGACCAGTGGATCACAAAGTACCACCTACGGTACAAGTTATGGTCGGATCTCATTAAAACCACTTACAGTGAACCAGGACAAAGCACGCCCAAAGAATTTGTTGGAAATAAAGACCGGGATACTGTTGTATACCATGAACTAAATCCACCAATCATCGGCCTTTCTTCCATCGTCTTCCGTCCAAAGGAATGGAATAACGACATAGCAATGAGGGTAGAACTTTATGGCTGTAAAGATGCATGTTCGTCCAGTCCGTGTAAGAATAATGGTACCTGTACCAGTAACTACACAGCAGGAGGGTTCTCGTGCAGTTGCCTTTCAGGATACACTGGTGATACTTGCGCCACAGGTCCTCCGCCAGATCCATGCTCGTCTAATCCTTGTCAGAATGGTGGTACATGTAGCAGTGACTCTGGAAGCTTCACATGCAGTTGTCTCTCACAGTACGCTGGCGATAAATGTGGAACGAAAGGTTGTCAAAACGCTCTCGGGATGGAAAGTGGCGCAATTAAGTATTGGCAACTTGCTGCATCCTCGCGATTTAATAGATTATCTGGTACCCATCAAGCCAGACTAAACTTAGGAGCAGTCAGAGGGCGGAGCAAAGGGGCTTGGATAGCAGCAAATCACGACTACAATGCGTGGTTCCAGGTTTATTTACATAACATTTACATTCTAATAACTGGTGTAGCAACGCAAGGCAGACAAAAAAGTAACGCGTGGGTGACAAAATACCGGCTGCTGTACTGGGGAGCTGGAGTGCATGTCCAGTACTACAAGGAAGAGGGGCAATCCGGCCCATTCAAGGAATTTCCCGGAAATACAGACCGGAATACCATTGTTCGTAATGAGCTTAACCCACCAATCAGAGCACAATTCATCAAGTTTATTCCAGTGGCTTGGGTGGGCGCCATAGCAATGAGACTAGAGATTTATGGCTGTCAAGATGCATGTTTGTCCAAACCGTGTAGGAATGGTGGTACCTGTGTTAGTGACTACACATCAGGGAGTTTTACATGCGTTTGTCCTTCAGATTACAATGGTGATACCTGTGCCTTAGCTGACCCATGTTCACCGGATCCTTGTTTGAATGGTGGCACGTGTTCAGCGGACAGTAATTCACTTGGTTTTACATGCAGTTGCTCTTCAGGATACATTGGTCTAAACTGTGCCATTCAGCAAGGAGATTCGTGTTTAGACGAACCTTGCGAGAATGGCGGCAACTGTACCGTGGCTAATAACTTGGTTGGATTTGAATGCAATTGTACCTCAGAATATATTGGTTTTAATTGTGACACTCTGAAAGAGGATGCGTGTTCTCCGAATCCTTGTGAAAATGATGGCAACTGTACAAGAGCCAGTAACACACAAGGATTTACATGCAACTGTTCTTCAGAATACACTGGTGATACCTGTGAAAATAAAATAGttcACGGCAACTGGAGTAACTGGTCTCCATGGCCGAACTGTAACAAGCCGTGTAATGGTGGAATTAGGATAAGAACACGCCTGTGTAATAGCCCTGAACAagcttttggcgggaaaaactGCACCGGTTCGACGAATGAAACTGAGCGTTGTAATTTGGACAGTTGCCCGCCTGAAGAGATAAATTACAAGGTCAAGCTAACAAATAACGTCTGGAATGATAATTTGGCCAACTCAGCAAGTCAGTCCTATATTGAGCTTCAGGACAGAATCAAACAAGACGTGAAGGGCCTCTACACCAaaagagatgaaaatgttgttgtaaaGGTCTTGGAATTCAGTAAAGGAAGTGTCATTTCCAGTTTCAACGTCACCTACCCTTCAGTAGACTCGTTACAGATTGTCGCCCTTCAGGAAGAATTTGCCGATGGAACGTTGGTTGATACACCAGCTGAATTACTCAACATCAAAACTACAAACGTACCAAACGGAGCCCCAGTTATTCTGGAAGCAGAGAGCAGCACTTCTACGTCTATTGTTGTCAAGTGGTCAGAGGTTACAGAACTTAATTTAGAGCTTCTTCTCGGCTATGCAATCGTGTATAAGGAAATCAACAAAAAATTCCAAGCAGACAACATGAAATCCGTTGAGCCAACCCCTCGTGAAGCAGTGTTAGAAGATTTGAAAAAGTTTACAAATTACATCATACGTGTGTACGCGTTTACTTGTAATGGAAACGGAATACCGAGTGAAGCAGCCTCTTTACGAACCCAGGAAGACGTACCCAGTCAGCCGCCGCCAAACAGCGTTGTCAAATCCACGAGCACAAGCACAATCGACGTTTCCTGGGAGCCAATCAGCCAAGCCTACGTGCATGGAATACTCTTGGGATACGAGGTTAGATATGCGAAGGATGATGGGTCGTCACCGTTGACTTGGGAAACAGTGCCACTTGATGCAAACACGGTTGGAGTGGTTTTAAATGATCTGGAATATTTCACACGGTACAAAGTGGTGGTTTGTGCCAAGACATCCAAAGGATGTGGGAAGGAATATTCCGACAGTGCTCACACATTTGGCGATGAAAGGTGTATTCTTTACATCAAACTTCTATTGAGCCATATTTATTATCCGGTGCTATCTTGTCTCTTCCAAGTACCCAGCATGCCTCCTCAAAGCGTGACAGCCCACAATCTCACATCCGCAGAGGCCATAAACGTTACATGGACACCGGTCCCGATAGGTCATGTCAACGGGCTTCTGATGGGTTATTCCATAAAATATCGAAGAATTCAAACTGCTGGCAGTGAAGTGTTTGCTACAGAGGAATTTACAGTGACTGTTAAACCAAACGACCTTATGGCTGAGCTTTCAGTTGAGACGTACTCGATTTACGAGATTCAAGTGGCAGCGTTTACTCAGAAAGGCATTGGGCCGTACAGTGAATTCGTTTATGGTGAAACCTGCCGTTGTCCCGCAATCCTCTACACAAACTATTGGTCGAACCCGCCATATCTTAAAGTGAACAAAGAGGACAATACGCTAGAGGGAGTACTAAGCGGGATTGTCACAGACATGGTGCACACAGCTTGCGGGATATGTCCCGCACATGGTGACACCTTCATCGATATAACTACGAACGGCAAGGATAAGCCTTCCGCCAAGAAAAGTGTTTCAGAAGTGCTTCGCGACATCCATGATGTTCCACAGATAAGTTTTCCAATCTACGGCAACAGATACGTCGAAAGATACTTGGGGGAATATGCTTACATCAACCTTGTAGAGTCCCCTGGGATGGCTTTTATTGCCGCTAAAAGGCCCCCCGGAAAAGCTGCTGGCAACATGATAAGCGCACTATTTGACTGTATGCCACTGTTAGTGTTGTCGGCGTGTATGGCTTTTATATCAGGATTTATGATCTGGGTTTTGGACATGAAGTCTAACCCTGATGAATTTCCAGCCAGCTTTAGGAAAGGTGTTGGTGAAGGATTCTGGTGGTCGTTCGTTTCCATGACTACTGTCGGGTATGGAGACCGTTCGCCCCGCTCTATCCCAGCCCGTATTTTTGCTATCATCTGGACACTAATTGGCCTCGTTATCATTGGCATTCTGGTTGGTGCAATAGCCTCGTCACTAACATCTGTTACTGTTGGCCATCCCATCATTCTCTATGGGTCAAAGGTTGGAGCCATTCATAACTCCATGGAACATCAAATCGCAACGCTGAAGAACGCAAGGGTGAACAAAGAACGGACGTACAGAAACTTCGAAGAAATACGAACAGCACTGGAAGATGGAGAAATCGATGGTGCTCTGTTAGACACATACGTTGCCGCAGAACATAAAGAGGAGATTTTTAGTGAGGAGATATATGTGAAAGAGATCCTAGACCGGCCATTTGGTTATGGAGTGGTGTTGTCAGGTGCTGCTAGGAATGTGGAACAAAGATGTCGGGATTACATTGACTTGCAAATACGTGAAATATTCGATATCATCCAGAATACGACAAAGACACTTGACCCAGCTGCTCCAGATGAGGACGTGGAAGAAAGCACAGGATTATTTGATGGTTCTTCACGTATGTTTTTTACCGCCATGATGTCCCTGCTTGGTATCTTGGGGGTGGCTGTAATGGCGGGACTTACTTATCAGTATTTGGTATTTGTTCCCGGAGGGAGGAAAGTAGAAAGGTTGAAAGCCTCCGCATCGCAATTCACTTACAAAGAGGCACTCGTTACAGAAATGAGAGAATTCGTGGACTCGTTCCACTCTGACATGTGCATCAAGATCACTGCGATGATAGAGAGGTACGAACGAGCAATGAAAGAGATGAACACGCGAGGCAAACGTGCGAGGCAGCCCAAGGAATTTGAAGACCTTTGCAAAGTGTCCTCGGCAAATAGGATCACAAATCCAGTATACTCAGGATCACCTGGAGAAAATTCATTTGATTTGAAAAGGACATATATTGGGAATGAATCGACAAAATGCATTGTTGACATCTCTCAACCATGGCATTCTTCAAATGCTGCAGTATTAAACCGTGCAAGAGCGTCTTCAAATCCCGAAGGCGCTTGCTCTTCGCTGCTGTGCGATGATGGACTTCCAGTCACCCGTGCAAAAGATGACAGACGCGAAACAAATGATTTGTGTAAGAGTAAAGCCAAAAGATCCTTAAGTAATGTCTAA

Transcript

FUN_024886-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96PD2	Discoidin, CUB and LCCL domain-containing protein 2 OS=Homo sapiens OX=9606 GN=DCBLD2 PE=1 SV=1
Q91ZV2	Discoidin, CUB and LCCL domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Dcbld2 PE=2 SV=1
Q91ZV3	Discoidin, CUB and LCCL domain-containing protein 2 OS=Mus musculus OX=10090 GN=Dcbld2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000062 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR050969 all species →	Family	Developmental Signaling Modulators	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949 all species →	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_024886-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Dendrogyra cylindrus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Dendrogyra cylindrus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →