Gene detail

Detailed information of FUN_025014-T2 in Dendrogyra cylindrus

Genomic Location: contig_53:2945636...2973443
NR annotation: XP_022805582.1, glutamine--tRNA ligase-like [Stylophora pistillata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025014-T2

ATGTGGCTGTTTCCTCGCAGATCTAGTTttcttttgagttgtgtttcACATCGAGTGAGGGTTTCTCCTTTGATTGTTTTACGATCAGTGATGGACAAGGCTACTCTATTCCAGAGTATCGGCCTAAGTGAGCAGAAAGCGCAAGAAACATTGAAAAATGATGGGCTTTCTAAACGCCTCGAGTCCATCATAACTTTGATGAAAGAAAAATCTTCAGAAATAATTGAGAAACCCACTGGTGTGTTATTGTACTCATTAGCGAGCAGCAGTATCAAAGATGACTGGCAAATAAAGTTTGTTGCGGAATATATTGCAGCCAAGAAACTTGCTTCCTCAATACAATTAACAGCGGCGGTTGACTATATGAAGTCCAATCCAGTTTTACCTGTTGATGTGGCTTCTTTTGAAAACAGCTGTGGTATTGGAGTGAATATCACACCGGACCAAATTGAAGATTGTGTTGAAGAACTTATTAAAAAGCACAAGGAAGAGCTGTTAAAGAAGCGTTATAAGTTCAATGTTGGAATGATAATGGGAAAAGCAAGAGAGAAGTTAAAGTGGGCAGATGGTAAAGCTGTGAAAGCAGAAATTGATATGCAGATCTTAGATTTGCTGGGGGCCAAAACTGAAGAAGACATGCAGATGTCAAAAACAAAGGAATCTAAACCCAGTAAGGAAGGGAAGGCTCCTAAAGATTCACGTTCAGCCTCTGCTGAGATGCAAGTAAATGGTGATGCTGGTGACGATGATGCAAACACCATGTTTGGAGAAGCAAGCAAGTTCCACAAACCAGGTGAAAACTACCAGACTCCTGGTTACGTCATAACTCCAAAGACTATGGCACTGCTGAAGGAACATTTGGAGAGAACTGGTGGTAGGGTACAAACAAGATTTCCACCGGAACCTAATGGTATTCTTCACATCGGCCATGCCAAGGCTATCAACTTCAACTTTGGTTATGCAAGGGCACACAATGGAGTGTGCTACCTGAGGTATGATGACACAAACCCTGAGAAAGAAGAGGAGAAATTCTTCACTGGAATCTTGGATATGGTCAAATGGCTAGGATTTGAGCCTTGGAAAATTACCCATGCCTCAGACAACTTTGGAAAATTGTATGACTTTGCAGTAGAGCTCATTAAAAGGGGACATGCTTACGTTTGCCATCAGCAGTATGAAGAAATCAAAGGCTACGATGCCCCACCCAGCCCCTGGCGGGACAGACCGATAGAGGAGTCACTTAGGCTGTTTGAGGACATGAAGAAAGGGAAAATAGATGAAGGAGCAGCAACCTTAAGAATGAAGACCACACTTGAGGATGGTAAAATGGACCCTGTAGCATACCGCATCAAATTCACCCCTCACCACAGGAGTGGGGATGAATGGTGTATTTATCCAACATATGACTTTACTCACTGCCTCTGTGACTCAGTGGAGGATATCTCTCATTCACTATGTACAAAAGAATTTCAGTCCAGaCGTTCATCATACTACTGGCTCTGCAATGCTCTTGATATTTACTGCCCAGTTCAGTGGGAATATGGCAGATTGAACCTGAGTTACACAGTCGTGTCCAAGAGAAAGATCGGCAAATTAATCTCTTCAGGAATTGTTAGGGACTGGGATGATCCAAGATTGTTTACTCTAACAGCTTTGAGAAGAAGAGGTTTTCCTGCTGAAGCTATCAATAAATTCTGCGGCAAGGTTGGTGTGACAATGGCTCAGACAGTGACAGATCCATTGCTTCTTGAGGCCTGTGTGCGAGACGAGCTAAATGTCACTGCTCCTAGggTGATGGCTGTGTTGGAACCACTTAAGGTTACAATTCAGAACTTTGACAAGCAAGTCAAACTCAGTGTTCCAAACTTCCCACAAGACCCAAGTAAAGGCAGTCACGAGATTACATTCGAGAAAACAATCTTTATTGAACAGTCAGACTTCAAAGAGGTGTCAGAAAAAGGTTTCCGTCGCCTGACTCCCGATCAGTCTGTTGGTCTCAAGTATGCTGGTCTGGTTATTAAACTTCACAAAGTTGTAAAGGATTCCAGTGGTAAAGTGAAAGAGTTGTTGGTGAATTGCGAGTCCACAGAAACAGCTCAAAAACCCAAGGCTTTCATTCACTGGGTTTCGTCACCACTGACATGCGAAGTCAGGCTTTATGACAGACTATTTAAACACAAGAATCCTGAGGACCCAGCTGAAGTTCCTGGTGGATTTATAACAGACTGCAACAAGGACTCTCTGACTGTAATCCCTGAAGCTCTTGTGGAGCACACTGTCAAACAAGCCACTGTATATGACAAATTTCAGTTTGAAAGAATCGGTTTCTTCAGTGTTGATCCTGATAGCAGTAAACAGAAAcTGGTGTTCAATCGGACAATCTCTTTGAAGGAGGATCCTGGCAAGCTTTAA

Transcript

FUN_025014-T2

TACCAAGCTTTGTTCATTTCATGCATGTGGCTGTTTCCTCGCAGATCTAGTTttcttttgagttgtgtttcACATCGAGTGAGGGTTTCTCCTTTGATTGTTTTACGATCAGTGATGGACAAGGCTACTCTATTCCAGAGTATCGGCCTAAGTGAGCAGAAAGCGCAAGAAACATTGAAAAATGATGGGCTTTCTAAACGCCTCGAGTCCATCATAACTTTGATGAAAGAAAAATCTTCAGAAATAATTGAGAAACCCACTGGTGTGTTATTGTACTCATTAGCGAGCAGCAGTATCAAAGATGACTGGCAAATAAAGTTTGTTGCGGAATATATTGCAGCCAAGAAACTTGCTTCCTCAATACAATTAACAGCGGCGGTTGACTATATGAAGTCCAATCCAGTTTTACCTGTTGATGTGGCTTCTTTTGAAAACAGCTGTGGTATTGGAGTGAATATCACACCGGACCAAATTGAAGATTGTGTTGAAGAACTTATTAAAAAGCACAAGGAAGAGCTGTTAAAGAAGCGTTATAAGTTCAATGTTGGAATGATAATGGGAAAAGCAAGAGAGAAGTTAAAGTGGGCAGATGGTAAAGCTGTGAAAGCAGAAATTGATATGCAGATCTTAGATTTGCTGGGGGCCAAAACTGAAGAAGACATGCAGATGTCAAAAACAAAGGAATCTAAACCCAGTAAGGAAGGGAAGGCTCCTAAAGATTCACGTTCAGCCTCTGCTGAGATGCAAGTAAATGGTGATGCTGGTGACGATGATGCAAACACCATGTTTGGAGAAGCAAGCAAGTTCCACAAACCAGGTGAAAACTACCAGACTCCTGGTTACGTCATAACTCCAAAGACTATGGCACTGCTGAAGGAACATTTGGAGAGAACTGGTGGTAGGGTACAAACAAGATTTCCACCGGAACCTAATGGTATTCTTCACATCGGCCATGCCAAGGCTATCAACTTCAACTTTGGTTATGCAAGGGCACACAATGGAGTGTGCTACCTGAGGTATGATGACACAAACCCTGAGAAAGAAGAGGAGAAATTCTTCACTGGAATCTTGGATATGGTCAAATGGCTAGGATTTGAGCCTTGGAAAATTACCCATGCCTCAGACAACTTTGGAAAATTGTATGACTTTGCAGTAGAGCTCATTAAAAGGGGACATGCTTACGTTTGCCATCAGCAGTATGAAGAAATCAAAGGCTACGATGCCCCACCCAGCCCCTGGCGGGACAGACCGATAGAGGAGTCACTTAGGCTGTTTGAGGACATGAAGAAAGGGAAAATAGATGAAGGAGCAGCAACCTTAAGAATGAAGACCACACTTGAGGATGGTAAAATGGACCCTGTAGCATACCGCATCAAATTCACCCCTCACCACAGGAGTGGGGATGAATGGTGTATTTATCCAACATATGACTTTACTCACTGCCTCTGTGACTCAGTGGAGGATATCTCTCATTCACTATGTACAAAAGAATTTCAGTCCAGaCGTTCATCATACTACTGGCTCTGCAATGCTCTTGATATTTACTGCCCAGTTCAGTGGGAATATGGCAGATTGAACCTGAGTTACACAGTCGTGTCCAAGAGAAAGATCGGCAAATTAATCTCTTCAGGAATTGTTAGGGACTGGGATGATCCAAGATTGTTTACTCTAACAGCTTTGAGAAGAAGAGGTTTTCCTGCTGAAGCTATCAATAAATTCTGCGGCAAGGTTGGTGTGACAATGGCTCAGACAGTGACAGATCCATTGCTTCTTGAGGCCTGTGTGCGAGACGAGCTAAATGTCACTGCTCCTAGggTGATGGCTGTGTTGGAACCACTTAAGGTTACAATTCAGAACTTTGACAAGCAAGTCAAACTCAGTGTTCCAAACTTCCCACAAGACCCAAGTAAAGGCAGTCACGAGATTACATTCGAGAAAACAATCTTTATTGAACAGTCAGACTTCAAAGAGGTGTCAGAAAAAGGTTTCCGTCGCCTGACTCCCGATCAGTCTGTTGGTCTCAAGTATGCTGGTCTGGTTATTAAACTTCACAAAGTTGTAAAGGATTCCAGTGGTAAAGTGAAAGAGTTGTTGGTGAATTGCGAGTCCACAGAAACAGCTCAAAAACCCAAGGCTTTCATTCACTGGGTTTCGTCACCACTGACATGCGAAGTCAGGCTTTATGACAGACTATTTAAACACAAGAATCCTGAGGACCCAGCTGAAGTTCCTGGTGGATTTATAACAGACTGCAACAAGGACTCTCTGACTGTAATCCCTGAAGCTCTTGTGGAGCACACTGTCAAACAAGCCACTGTATATGACAAATTTCAGTTTGAAAGAATCGGTTTCTTCAGTGTTGATCCTGATAGCAGTAAACAGAAAcTGGTGTTCAATCGGACAATCTCTTTGAAGGAGGATCCTGGCAAGCTTTAATGAACAAGGCTCAGCTCCTGACAATCAGAATAAAGGAATTCACAATAATAACAAAATGATGGCTGGGGAATGCCGGAATCTGCAAATTTTGGATGTCTTGCCAAAATCTCTTATTAGTCTCAGAGTCAGAATTTTTAAGACCAATGGATGATTTTTGGAAGCTGGCATGTGCTTATGTAAGCTGATGTTTGGTAGTGACAGTCATTGTTTCATTTCTCTCTTTTTGAAGTTTTTGTTAGTCTTCTCCCAAGTGCTTTTGCCCAAgaaaattttgcaatttctggaaTTGGAGGGGCTGGGCTGCAGCCCTTCTCACCTCCCCTGCCCATACTCCTCTGAGTATTTATAAGAGCTGTATCCAAGGATTAAGTTAAATTTTATAGTTTTTCAACTCGACACTGATGCCAAAACAAGCAACtttgtttgaaaattttcaaaactcagaaagcaaaatattaagtgactaggagtaaaAGGTGAACCATTATAAGGTGTGGCGAATGGTCCTTTGAAAAGTATGTGTTACACAGAGTGCCACAGAATACCAAAATTCTCGGATATTGTTGATTTTTTTCCAGTGTCTTCTCTGTCTAAATGTCTTTTACAAGAATGAAAAAGTCTCATGCttacaggaaaaaaaattagtctTGGGGCTGATCCAACCCTTTCAGACCACTCATTTGGTGTTGTTGCCCAGTTCTCGTACTCATCttttactgaaaaaaatgtgacaaaacagagggctgtgaacagtttaTAAGACACCAATCTTGTCCTGAGAGCCCACtttccttttggtcagcaccaagaatgcAGAGTCTTGCCAAATCCAATGAGACAGTCTGCATTTCACGGACTTCTGGTCCTTTAtgcccaaatctgattggctgacaaaATTATTGAAACTGAGCACTCTGCACATTCTCAAAAAATCGGACCTGGCCAGAGTTCGCATTCTTGGCACTGACTAAAAGAAAAGCGGAGCTCTCTGGACGAGATTGATAAGACACCAATTAAAAGTACATTTCACAAGCCATCATCTACTGAAGCAAAATCTACTAACAGGTTGGAATGCCTTTTAtgattatttcaaaataatattgttttaaatAACTAAGAACCCATCCACAAAACTAAACAATGTGTTTTGTAAAAGCTCAGAAAGCTAAAAGTAATCATCAATAAAGTGGAACTCAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47897	Glutamine--tRNA ligase OS=Homo sapiens OX=9606 GN=QARS1 PE=1 SV=1
Q3MHH4	Glutamine--tRNA ligase OS=Bos taurus OX=9913 GN=QARS1 PE=2 SV=1
Q66H61	Glutamine--tRNA ligase OS=Rattus norvegicus OX=10116 GN=Qars1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002736 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04558 all species →	tRNA_synt_1c_R1	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1	Family	Interproscan
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF04557 all species →	tRNA_synt_1c_R2	Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2	Family	Interproscan
PF03950 all species →	tRNA-synt_1c_C	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan
PF20974 all species →	tRNA-synt_1c_C2	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020056 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Interproscan
IPR000924 all species →	Family	Glutamyl/glutaminyl-tRNA synthetase	Interproscan
IPR042559 all species →	Homologous_superfamily	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2	Interproscan
IPR007639 all species →	Domain	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan
IPR007638 all species →	Domain	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2	Interproscan
IPR042558 all species →	Homologous_superfamily	Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1	Interproscan
IPR004514 all species →	Family	Glutamine-tRNA synthetase	Interproscan
IPR050132 all species →	Family	Glutamine/Glutamate--tRNA Ligase	Interproscan
IPR020059 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain	Interproscan
IPR049437 all species →	Domain	tRNA synthetases class I (E and Q), anti-codon binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43097 all species →	GLUTAMINE-TRNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0004819 all species →	Molecular Function	glutamine-tRNA ligase activity	Interproscan
GO:0006425 all species →	Biological Process	glutaminyl-tRNA aminoacylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01886	QARS, glnS; glutaminyl-tRNA synthetase	EC:6.1.1.18	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.