Gene detail

Detailed information of FUN_025108-T1 in Siderastrea siderea

Genomic Location: contig_23:9948260...9955797
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03250 all species →	Tropomodulin	Tropomodulin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004934 all species →	Family	Tropomodulin	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901 all species →	TROPOMODULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005523 all species →	Molecular Function	tropomyosin binding	Interproscan
GO:0051694 all species →	Biological Process	pointed-end actin filament capping	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10370	TMOD; tropomodulin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.