Gene detail

Detailed information of FUN_025144-T2 in Acropora pulchra

Genomic Location: ptg000018l:14403145...14463050
NR annotation: XP_029213906.2, LOW QUALITY PROTEIN: oral-facial-digital syndrome 1 protein-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_025144-T2

AATTGCCAACATGGCGGAGTTATCGTCCGAAGAATTCAGAAGAAATCTCTTCCAAACCTTTCGTAGTCGTGGCGTGTTGGGAGCGCTCAAGACTCAGCTCAGAAATCGTCTGATAGCAGAGCTCCAGGAGACGGAAGGCCAATCAGGATTTGAACAGCAAAACCATTCATCAGCCGTTACAGATAATTTATGTGAACTTGTAGCCAATAGCTTGGTTGCAGACCATTTAAAGAGGAGCAAATATGAGTATTCCTTGTCAGTCTTCTTACCAGAGAGTGGTTTACATGAAAGCAAGTTGTTGTCTGTAAAGGATGTGCTTCTGATCCTGAAGATCACAACTGAGTCGCAGCTTCACAAGCACTTGGAAATCCTGATTGGTAAAGAAAGATCATCCAAAGGTTTTCTTACAGAGTTATTGACTCAACTGGTGTCATTACACAACCATGAAAAGTCATCAAAAGCTGTTCAAACATTCTTGCCAGGAGGTCAGTCTTCATTGGAGGATAAGCTTGAAAGTGTGGAAAACCAGTACACAAGGAACCTTCAAAATGAAAATAAAAAGTGGAGTATCCAGATGGAAAATCGCTTGTTCGAGTTGAATAGACAATGGGAGCAGAAAAAGAAGAAAATTTTAGATGAAGAGCTTGAGTATGTGAAAGCTACTGAAATTGCTCAAGTAAAGTTGGCGGAAGAAGAAAAATATCACAAAGAAATTCAGAAAATTCGACACCAGTTTGAGAAAGAATTTGCAGCAAAATCAGAGAAATTAAGAGCAGGTGAAAAGGAAAAATTCCAATTCCTTGGTCATCAAAAACAGATGCAAGATGAAGAAGCTTTTTCTCAGCGACAGAAACTTCTTGAAGGCATGCTTGCTCTCAAGGAACGGGAATCAGAATTTGATTTGAATCAGCAAATGAGACTGAAGAGTTTACAGCTTGAAGAAGAAAGAATCAAAGTTTTGTCTGAAGAGTGTAAACATAAGAAAGGTCTCCTGGAACAAGCAGAAACGAATTATCACAATCGACTTCAGGAAGAAGTAAAAAGGTACAAACGAGAATGCGAAGAAGAAATGTTTGAAAGAAGACAAAATTTAGAGCGCAAAGAAAATCAGATACAACGCGACAGAGATACTTTCGAAAAGCAAAGAGATGCTTATATGAATGCCTCCAGTGAGTTGCAACGAACAAAAGAACGGTTACAAGAATTACAGCGTCAACTTGAGAACAACAAGGAAAAAGTCTCTTCAGTTCTTCAGCAGAAGGAAGCTGCTATTCTGAAGGACCGTGAGGCTGTCAAGGAAAGAGAGCTCAATCGTAGCAGGGAGAATGCAGCGTTGAAAAGAGATCTGCTGAAATTCCAAGAGGAGAAGAAAGGACATGAAAAAATTATCCAGGAACTAACAGAGAAGTCTATAGAATCAGCGGCAGACCTGCAACGTTTACGGGAAGAACTTAAACAAACAAACAAAAACAGCAAATCAAAGGAAAAGACCTGGAAAGATCTTAAAAAGAAGTTGGAATCCAAATTAGATGACGAGCGCCAGAAAAGGCAAAAGTATCAACACCTGTATGAGAAGTTGCACGCGAGTCATTCCGCGCGAGAGCAAGAGGTCGCGGACTTGAAGTTCACTCTGCAACAAACTCAACAAGTTCTTGACATAGAGCTCGACAGACGAAGAACAAATTCTGTTCCTCGAATCGAATCGGTGTCAAGTGATGTCGAGTTGCCTGTGGTAAAACAGGGACCCCAGCAAGCACGGCCGAGGTTAGCGACAGACACGGATAGTAATGCGGATGAAACTAGTGGTACTATGGTTATGATTGCACAAAGCAAAGCACTCTTCGATCGTCTTGAAACAGAAGCCAAGGAATTAGAAGAGTCTTACCAGCGATTTCAGTCTCGTATCAATCAGATGGAGCTTGATGTTCTTCCCGCGGTACGCGCCGTGGAAGCAGAACAGCCTCCACTACAGCAACTTCCTTGAAAATGCATTTCATCTATAATAAAACTGTAGCTTGCCAAAATCGCTACAATGAGAAAAATAAAACAACTCCGCCACAGACTTAATTCGCTCTTATTATATTTAACATTTGAAGAGAGAGCGAGAGCGCGCGATTCGATTAAAAGGAAGGCAAAGAAATTTAGAGTGTTTGAAGTAATAAATCAAAAACGAGTGCGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75665	Centriole and centriolar satellite protein OFD1 OS=Homo sapiens OX=9606 GN=OFD1 PE=1 SV=1
Q80Z25	Centriole and centriolar satellite protein OFD1 OS=Mus musculus OX=10090 GN=Ofd1 PE=1 SV=1
Q7SZK7	Centriole and centriolar satellite protein ofd1 OS=Danio rerio OX=7955 GN=ofd1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003511 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16045 all species →	LisH_2	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39063 all species →	ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan
GO:0060287 all species →	Biological Process	epithelial cilium movement involved in determination of left/right asymmetry	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025144-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.