Gene detail

Detailed information of FUN_025225-T1 in Acropora pulchra

Genomic Location: ptg000019l:181015...188111
NR annotation: XP_044178400.1, uncharacterized protein LOC114949237 isoform X6 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025225-T1

ATGGGAGGGAGATTTTCAAGAAGGTTGCAAAACCACTTGGCCAACGATGAACCTTCCCTTACGCTTGGCAGACTTGGAGAATCCATGGATAACCACATTACCGAGGAAGCAGGCGCCCGGGCTACAGGAGGAGATACCCTTCGAAAAGCTATCGAGAGTTATAAAAAGACTTTGCACATTGCCAGGAAAGCAGGCGACCGAGCTAGAGAAGGAAAAGCCTATTTGAACCTTGGGATACTTTACAATTCTCGCAACGATCTTCCAAAAGCCAACAAGTGTTTTGAAAAGGCTTTGAACAATGCCAGGGAAGCTGGAGACTGGGCCACAGAAGTTGATAGCTATTTTTATCTTGCGGCCGTTTACAGCTTCCGCAGTGTTTCAAAAGCTATCGAGTGTGTTGAAAAGTGTTTGCACATTGTCAGGGAAGCAGGGGACCCGGTTAAAGAAGGACAAACCTATTTGTTTCTTGGGATACTTTACAAATTCCACAATGATCTTCCAAAAGCTATCGAGTGTTATGAAAAGGCTTCGAACATTGCCAGGGAAGCAGGCGATCGGACTACAGAAGGAGAAGCCTATTTGAATCTTGGGATAGTTTACGATTCCCGCAGCGATCTTCCAAGAGCTATCGACTGTTATGAAAAGGCTTCGAACATTGCCAAGGAAGCAGGCGATCGGACTACAGAAGGAGAAGCCTATTTGAATCTTGGGATAGTTTACGATTCGCGCAGCGATCTTCCAAAAGCTATCGACTGTTTTGAAAAGGCTTCGAACATTGCCAGGGAAGCAGGCGATCGGTCTGCAGAAGGAAAAGCCTATTTGAGACTTGGGATACTTTACAACTCCCACAATCATGATCTTCCAAAAGCTATCGAGTGTTATAAAAAGGCTTCGAACAATGCCAGGGAAGCATGCGCCTGGGCTACAGAAGGAGCAGCTTATTTGAACCTTGGAACAGTTTACTATGCCCACAACGATCTTCCAAAAGCTATCGAGTGTTATGAAAAGGCTTCGAACATTGCCAGGGAAGCAGGCAATCGGACTACAGAAGGAAAAGCCTTTTTGAACCTCGGGATACTTTACAATTCCCGTAGCGATCTTCCAAAAGCTATCGAGTGTTTTGAAAAGGCTTTGAACAATTCCCGGGAAGCTAACGACCGGGCTACAGAAGGAGAAGCCTTTTTGAACCTTGGGATACTTTACAATTCCCGTAGCGATCTTCCAAAAGCTATCGAGTGTTTTGAAAAGGCTTTGAACAATTCCCGGGAAGCTAACGACCGGGCTACAGAAGGAGAAGCCTATTTGAGACTAGGGATACTTTACAATTCCTACAGCGATCTTCCAAAAGCTATGGAGTGTCTTGAAAAGGCTTTGAACAAGGCCAGGGAAGCTGGCGACCGGGCTACAGAAGGAAAGGCCTATTTGCTTCTTGGGATAGTTTACGATTCTCGCAATGATCTTCCAAAAGCTATCGAGTGTTTTGAAAAGGCTTCGAACATTGCCCGGGAAGCAGGCGATCGGACTATAGAATCGGTGACCTGTTTGAGCCTTGGCGTACTTTACTATTCACGCAGCGATCTTCCAAACGCTATCCAGTATTGCGAAAAGGCTTTGAACATTGCCAGGAAAGCAGCCGACCGGGATGTAGTAATCCGTGCCAGTCAATATCTCGAGAATTGTTTCTTGGCCCTTGGCGATTTTTTGAAAGCTTCTGAGTATCGTGAAAAGACTTTGATATTCAACGGAGTGGGTACTTATACTGAGGAGTCAACAGAGGGACCTGTGTGCAACATTCAAGTCACCCCTCCTGAGATTAATCTACGTGGTCCCAGGGCCATGAAGGCCTACAACAGGGCTCTTACAGAAGGAAGAACTCGTGTAAGAAGGATTCCGATCATGTTGATTGGACAGGACCGTTCAGGAAAAACAAGCCTAAAGAAGTCGCTCCAGGGATTACGATTCAACCCAGCTGAAGATAGCACTGTTGGGATAGATGTTGATCCATCCTACTTCAAAGTAACTACTGAGACATGGAAGATAGGGAAAAAGAATCAAGCAGTAAACAAAGAGGAAATGACTGCTTCTTTTGAGCATCATGTAGCTCGCGTAGTTGTTGAGAATCTAAAGGAACAAGAATTGACTTCTGAAGAAAAGACTATGGACAAATCGATTGAAGATCGTGAAAGTTCCTCGACGATTTCCACAGAGGCTCAAATAGTGTGTGAAAGCAATGAGATCCCTAAGGATCACCAAGGGCTGTCCACTGCAATCACTCCTGATCAAGTTGGCTCGTCTTCAGATTCGTTTTCAACTGCACGAATCAAAAGAGAAGATTATGCAGAATCTTTAAAGTCATCCGGTGCTGCACACGTCGTTGGTGGCAGTCGAATCCTTCAAAAACCAGAGAATTATCCAGCACTAACGAAAGCCAGAGATAACACTGTTTCCTCGGAAATAATACCTAAAGACATAGAAACGTTGATTAAGAAACTACTGGATAAATTTGATAAGGTGGAAAGTGAAGATGACATCTATTCGGTTTTGTGGGATTTCGCCGGACAGTCAATTTATTATGAGACCCATCAACTCTTTCTGACGTCAAGGGCAATCTACCTTTTGGTTTATGACCTAAGCCGGGATCCTATGGAATGTGCACAGCCCGTGAAAAAGCAAGGAGTCTTCGCGAAAATTGAAGAGAAGTCGTGTACGAAAACTAACCTCGACTATCTAGACTACTGGATGACTTCAGTTTCTTCACAATCCAGTGGAATTGAAGATCACGATTTGAGTTCAGCTTCGACATCCACCGTTCTGCCAAAGACACTTCCTCCTGTCTTCTTGATTTGTACCCATTCTGACCAACCTTTTGACGGAAAAGGTTCTTCTGACCTAGCCCTTGAAATATACGGTTTCTTGAAAAGAAAATCATACGGCGAACAGCTGTTCCATGATGTGTTTAAAGTGGACAATACTAAATCAGGCGGGCGAAAGGAATGTCCCGAAGTAAAGCGCTTGAGAGAAAGTATTTTAGCTGTTGCCAAGGAGCTACCACAAATAAAAGAGATCATTCCGATCAAGTGGTTGAAGTATGAAAAAGCGCTCCAGGGCGTACTGGATGAGGGCCGTAAGTGCATCACTATTGAGGTTGCCAAACAGATCGCCTCTGAAGTTTGCAAAATTCACGACGATGAAGAGTTCGTAACAGTGCTTAACTTTTTGCACGATCAGAGAATTTTAATACATTTTGATGACACTGTGGAACTCAACAAATTGGTTGTGTTGGATCCTCAATGGTTGATCGATGTGTTTAAGACAGTAATAACTGTTAAGCGTTATGACCCGCAAGAAAGGGGCTTTAACGATTTGTGGCTTAAACTAGAAACAGAAGGAATCCTGGAAGAAAATCTCCTCCGGCATGCGTGGGATCAAATTGTCGGAGAACATCAGACCTTCGAAAGCCTCATCGCAATCATGGAGAGGTTCAGCTTGCTGTGTTCTTGGTCCTCGTCAAATGAGCTAGGTAGTAAGGAGTATCTTGTGCCGTCCATGTTGAGGTGGTATCCACGACAGGAGATCACCAAGTTGATTACCTCGGCAAGTCTTCCGTCTCTTTTCGTCAAGTTTAAATCTGGTCAAGTTCCATCAAATCTGTTTCCACGACTTGTTGTTCAGCTCCTTCAGTGGGGAAGAAATGAAGAATTTTGGAGCAGAGTGGACCCTCAGCTGTATAACAGTTTCGCCAGAATTTACACCGCTGAAGACGAAAACTATTCAGTGGTACTCTTGTGCCATTCCTCCATGATTGAAGTCGTTGTTCATAAAGGAAATGCTCTTTCGTTAAAGAACGACCTGCAGGTAGATTTAGGCATCTCGCTTGGAGATCAACGGGATTCATTTGAAGCGCTCTGTGCTCGTAAAGTTTACAGGCAGCTCGTGTTGTTGCTTGAGTGCTTACGAAGAGAGTTTTGTTGGTTGAAGAGAATGGATTATCAAGCCGGAATCATTTGTCCGGTTTGTTGCCATAAAAAGCTTGTCAACTATTGCCGCACTCATCACAAGCAAGGTTGTGAGCAGGAAGAATGTCTTCATTTCATACCTGAATCGGAGCTGTGCAAGTCAAATCAGCATGTCATTTGCACCAGGTCGGCTGTTGCAGTAGATAACAAAGTTTACAGCAAGGATTTTACAGCGTGGTTTGCCAGTCCGCGTGAAGAGACAACAACCGAGGCCAATGGTGGCAGACTCTCATGCAGTCGAAGAGAGAGTGAAGACAAGTCAGTTACTCTTCCTGGCAATGTCGTTGAATCGCTAGCGTCTGCGTCATGTGATCCAAAAGAAACTGTACTTCAACTCGCAGAAAACTTCCACTTGGACCAAACAGATTTGGAGAAACCCACCCCGGAAACAACGAGAATGATCCGTTGTTTTGCAGAAACAGCTAAAGATTCAAAACGAATTGATGTTTTCAAACACCTGAGAGAGATCACACCTACAGGAACAACTGGTCCATTGTTGCCTGGGAAACTTGATGTTTGGGATATCCCAGTTGAGAAGATGAGAGAACTTACCATGCATTTGACCGTAACAGACTGGCAGTGGAGGGGTGTTGTGGAGAAACTGGGCTTACGACCGGTCGAGATCGAATTTCTTGATATGAGATATAAGAACCCCTGTGACGCTGCATTAGCCTTTCTGGCGCAACGTGATGGTATGAATGTGGATGATCTGTACGATGCGTTAACTGAGTGTGGGATGCCTATGCTGGCTGATATTTTGTGA

Transcript

FUN_025225-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6XHB2	Probable serine/threonine-protein kinase roco4 OS=Dictyostelium discoideum OX=44689 GN=roco4 PE=1 SV=1
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF12862 all species →	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF13176 all species →	TPR_7	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR026000 all species →	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025225-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.