Gene detail

Detailed information of FUN_025228-T1 in Acropora pulchra

Genomic Location: ptg000019l:225498...230625
NR annotation: XP_044171705.1, tetratricopeptide repeat protein 28-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025228-T1

ATGTACTCTCCTCTCGCTAAAGGACTGAGAAGAAACCGAAAGGCAATTCTAAGAGATTTAGATCCTTCAAAGTGCTGGAATTACCTCTATCAAGAGGGAATTTTTGATCTGGATGATATCGAAGAAGTTAAGGCGGAGAGAACAAGGAAAAAGAAAGCCGAAGCATTGCTAGAGAAAGTGGAACACTCAGGTCCTGGTGGAATTGCTATCTTCGCAGAGTCGTTACGGGAAAGTCAAAGCCATTTGTTCGACCTACTTCAAAGTTGTATAAACGACACTATGTCTCACAGAGGCCAACTGCAAGCAGTCGTTGGAACAGAGACCCTGGTTGCAGCTGGTCACGTGACCACCCAGGGAGGGACCCTGAACGACAGAATGCTGCCGGCCACAATAGTTTTCGTATTTGGTGTGTTGTTAATGAAAGTGACAGTTTTCACTCGAAATCAACAAGCAGAATTGGTTGGGGCATCTTCGCACGAAGAACAAACGGAGAACGTGAGAAAACCTTGCGTAGACCAAAAAAACGATGCTTTTGACAGGAGTCAGATCTCAGTCCAGGAAGGTGTGGAGAGGACAAGCGTATCCACTGAAGACAGAACAGGGGAAGCAAGCACCCCGGCTACAGAAGGAGATCTTCCAAACGTTATCGAGAGATATGAAGAGAGCCTGCTCATTGCCAGGGAAGCAGACGACCGGGCTACAGAAGGATATATCTATTTCCATCTTGGAAAAGTTTACGAATCCCACCGCGATCTTCCAAAAGCTATCGACTGTTATGAAAAGGCTTTGGACAATGCCGGGAAAGCAGGCGATCGGGATATAGAAGCAGATAGTGCTTTCCGTCTTGGGGCCGTATACAACTCCCGCGGTGATCGTCCAAAAGCTATCGAGTGTTTTGAAAAGAGTTGGCACATTAACAGGGGTAAAGGCGGCCGTAAAGAAGGAGCAGTCTGTTTGAATCTTGGGGAACTTTACGAATCCCAGAATGATGTTCCAAAAGCTATCGTTTGTTATGAAAAAGCTTCGAATATTGCCAGGAAAGCAGGCGATCGGAAAATAGAAGGGATGGCCTTCTTGAATCTTGGCATACTTTACCGCAGTTCCCCCATCGATCTTCCAAAAGCTATCAAGTGTTTTGAAAAGGCTGCGAACAATGCCAAGGAAGCAGGCGATCGGGAGACAGAAGGAAAAGCATATTTTAATCTTGGGTTGTTTTACGAATCCAGCAGCGATCTTCCAAAAGCTATGGAGTGTCTTGAAAAGGCTTTGAACTATGCCAGGGAAGCTGGTGACCGGAATGGAGAAGAAATTGCCTATTTCCGTCTTGTGGCCGTTTACCAGTCCAGCAATGATCTTCCAAAAGCTATTGTCAATGAGTGTTTGGAAAAGGCTTTGCACATTGCCAGGGAAGGAGGCCAGCCGGCTAACAAAGCAAAACTCTATCAGTCTCTTGGGACATTTTACTACTACAACAATGAACTTCCAAAAGCTATCGATTGTTGGGGAAAGACTTCGAACATTGCCAGGGAAGCAGGCGACTGGGATACAGAAGGAAAAGCTTATTTAGATCTTGGGATAGTTAACCATTACCGTGGCAATTATCCAAAAGCTATCGAGTGTTATGAAAAGGGTTTGAACATTGCCACGAAAGGAGGCGACGAGCTGGTCATATTCCGTTCCTGTGAGAATCTCGAAGATTGTCACTTGGCCCTTGGCAACCTTTTGAAAGCTTCCGAGTATCGTAAAAAGAGTTTATCCAAGCGAGTGGGTGCTCTTACTGAGGAGGCAACAGAGGGATCAGCCTGCAACCTCCAGGTGACCCCTCCTGAGATTAATCTACGTGGTCTCAGGGCCATGGAGATCCAGAAAAGGGCTCTTACAGAAGGAAGACCTCCTGTAAGAAAGTTTCCGAAGATGTCGATTGGACAGGGCCTAACAGACTGGCAGTGGAAGGTTGTTGCGGAGAGACTGGGCTTAAGGGCGAATGATATTAACTTTCTTGATATGAGATATCCGAATCCCTGTGAAGCTGCATTGGCCTTTGTGGCGCAATATCATGGCATGACTGTGGATTATCTGTACGATGTGTTAACTGAGTGTGGGATGCCTGCGCTGGCTGATTTTTTGTGA

Transcript

FUN_025228-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0020841 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025228-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.