Gene detail

Detailed information of FUN_025298-T1 in Dendrogyra cylindrus

Genomic Location: contig_55:16175...31441
NR annotation: XP_020609293.1, neogenin-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_025298-T1

ACAGAATAGGAAACCCGCTGTGGTGTGATACTTCATTGTAGCTTCGTATGAATTAAGTGCTAGGTTTTCAGTTAGGACGTTTTTATTGGTATTTGTAATATTgtagaaaataaatttctattTAAGAATAAAACTATTTTGAATGGACAATTATTTGTTTGTATTTGATTTCCCCTTCCCGTCTCAGCTCTCTCATTTCTTGCTTGATCCCAGTTTCCCTCTTTCAACAACAGGCGAGGCCGCTAAGCTATTTTTGCTCCGTGTCCCCGATCACGTACGCGACTTCACGCTCAACTACTAAGGAAATAAGACAAAATGTTAGTGTACTTAGACTACAAATCGAGCAAAAACTACCCAGAAGCAGCAGTGCAGATTAATATTACTTTGGAAGTGGATAATCCTACCAGAGTCCTTGTAAACACTTCTAAAGTCTACTTACGCTGGAACTATTCCATTGCTGGTGATGACTTGAAAGAGGTTGATTTTCATTATGGTAGTGATGATGTATACATTGGGTACATAGACCCCTTAAGGATTAAAGTCGCAGCAAAGTTCAAAGAACGTTTTGCCTTGGAGCGACCAGGAACACTGATTATCCACAATGTTACAGCTTCAGACACAGGGACATATATATTTGATGTCAGGACAGTTGAAGCAACAAAAGTTTCGAGCTCTGTCTATCTTGATGTACTTGTTCCAGCAAATTTCATTAGCAGGCCAACAAACCGAACAATCAATGAAACAGAGACAGTGACATTCATCTGTGATGTTGATGGTAATCCAACGCCTACCATCAAATGGTTTAGAGAAGGACAACCTGTTGGGACAGGCAGCCCACTTAGCTTTCCAGTGTCCAGGAATCACTCAGGATACTACTTGTGTACAGCTGACAATGACTTGAATGTGACTCTCAATGCAAGTGCTTATCTTGAAGTGCACTATCCTTCTGAAATTGATAGCCCTCCATTTAATGAGACTACTGTCATTGAAGGCAACAATGTGACTTTTCACTGCAATGCAAGTGGCAATCCAGCACCAATTATCACCTGGATGAAACATGGCAGCCAAACAGTCTTACACCAAGGAGAGGAATTCAGTATCACAAACATctcacgacatcaagatgggaGCTACATGTGTTCTGCATGGAATCAAGTGGGACAACCAGCACTTGCTAACTTCAGTATCACTGTACACTTTGAACCCAAGGTATCAGTCCAGTCATGTCCAAGCTCATTTACTGAGGGCAGTAATGCAACTCTTCAATGTAATGCTATTGGTAATCCTCCTCCAAGCATCACATGGATATCGCAAGACACTGGGGACATTCTCACTAGCAGTGGACAGCTTTTTCTTACAGCTGTTAATCGCACCCAAGCTGGTCTTTATAAGTGCCATGCATCAAATGGCATTGGTAGCAATTCTACAAGGTCATGCAATTTGGGTGTGCTATGTAAGTAAGATATGTGTTAGAATGTATGATTAAAGCATGTACACtgtatttattaataattaccATAGATTTGTACCGTACAGTTAGGTTTTTGCTTGGCTAGTCAATGTCACACAAAGGTACTTTAAACTCATCGCAAATAGATGAGCTTGAGAACTGGTGCCTTAAAGGTTAGCGGGGTGCCAAAGCCATAAGCTGCTAGGAGgtatccatgacaaccctgGAAAGCAGGAACCACCTAATGAGTGTCCGCTAACCGACACCGTCACACTGAAAAGAATTCAGTGGAAACTACTTACCTGAAAAATACTTACCCAGAACCAGAACAAAATGGGAGGGAGGAGAGGGTGCAAGAATCCACAATGATTCGCTAGCAAATACAGCAGATAAACTGATCCGCAACAATCAGCTGAATACACTAAAGCAATTGTGCAATGAGCCATAAGCCCCTGCAAAACCCCTGAAGGCCGCCCCACAGGTCACGTACTCCTAAAGGGGAAAATTGCTGACTGTATAAGCTCAAATTTACTTGCCTAACTGACAATTGCTGATTGGGCACGCTTGCTAGCTGCATTAGCTCGCGTTTAACCTTGCCTTAATGATATTTAGCCACATAAAAGGTGTAAAAATAATGTCAAATGTCATTAATTTTAATCACCCATGCAATATGGAAGAGCTCCAGGGGCTTGTTATAATGTGGACTTGCATCAAAGTTCAAATTGGAATTTGCCGTGCTGTTTTGTGGAGGGAAGAAAACCAGAGAACCTAAAGataaaccctcggagcaaggatgagaaccaacaacaaattcaacCCACACATGATCCTGGTTTTGGAATCGAATCTGGGCCACATTGATGggagcaaccctccaagtttatttttttccttagtggccatttggccaccgactgctcaagtttggtcgccagtgaaaaattttagttgctaaatcaagctcaccttttcaatccttcttctcaattttagtcgccatggcgactaaaa

Protein

Uniprot

Uniprot term	Description
A4IGL7	Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043005	Cellular Component	neuron projection	Interproscan