Detailed information of FUN_025442-T1 in Acropora pulchra

Genomic Location: ptg000019l:2725712...2739860
NR annotation: XP_044176883.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114951054 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9P2N4A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens OX=9606 GN=ADAMTS9 PE=1 SV=4
Q62507Cochlin OS=Mus musculus OX=10090 GN=Coch PE=1 SV=2
Q3V0T4Integrin alpha-D OS=Mus musculus OX=10090 GN=Itgad PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000019 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan
PF08685
all species →		GONGON domainDomainInterproscan
PF07691
all species →		PA14PA14 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR012314
all species →		DomainPeptidase M12B, GON-ADAMTSsInterproscan
IPR050525
all species →		FamilyExtracellular Matrix Assembly and OrganizationInterproscan
IPR037524
all species →		DomainPA14/GLEYA domainInterproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR011658
all species →		DomainPA14 domainInterproscan
IPR006558
all species →		DomainLamG-like jellyroll foldInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020
all species →		COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004222
all species →		Molecular Functionmetalloendopeptidase activityInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_025442-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP