Gene detail

Detailed information of FUN_025571-T1 in Acropora pulchra

Genomic Location: ptg000019l:4580201...4586745
NR annotation: XP_029205576.2, 45 kDa calcium-binding protein-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_025571-T1

CTCGTTTGATAAAACCAAATTTTTGTACTGACAAAGAAGACTGGCACGAGTAAACGTGTGGCCGTTTTCAATATGGCGGTCGTGAATGACTTTTTTGTTTTCCTTTTGGTTTTGTTACCGATGTGCAGAGGCAAACCGGTAAACGTAAACAGAACAATACCTACGGATAATAAAAACGAGACGAAACCCAAGAAAACATTTAACTTAATTGAAGATCATGTCAAGGGCTTGAAACTCGAGAGAGATGGACATGTCAATAAGGATTACCACCACGAAGCTTTCCTCGGAAAAATGGTCGAGGAAGGAACCTTATTATTCGATAACATGGAGGGTTATCGACGGCTTATTGATCTCTTTCACAAGGTAGACAAAGATGGAGATCACCTGGTGAGTAAGGCAGAGCTCACGGTTTGGATTCACGAGAAAATAAAAGAGCATATTGACGAAGCCAAAGCAAAGAATCATGAATTGTTCAAGGAAGTTGATCGTGATAGCGATGGATATGTTACATGGAAAGAATTCCAGAAAAAGCTGAAAGAAGATAATACAACGAATAACAATCCGGAACCAGAGTTAGGTGGGTCCATAATTTCCAAAATACACATAAAGCCTATTCGTGCATTGCATACATACGTGGTACTGTATCATTCTTGTGAAAGAATAATAATTAAGTTTAAAAAGATGAAACAATAATTATTATTATTACTTGAAAACGTACGGTCTTTGCTTTCTGGCAACACAGCTCTCTTTAATTTGTCATAATTAAAGAAGAAAAAAAAGATTAATTTTCATGTTTTGTTAAGTTAATATGACCCCTAGTAAAACATACTGAAGTTATTTTCTCCCCAAGTGAAAAAAATGACAACTGCCTCCATGGCTAGGTTATTATAATATGCCTGTCATTTCCAGGCTTTTAGGTTACAAACTTTTCTGGGGGAACATCCTCTCAGAGCCCCCTAGCAGGAGGGGCCTTGCAGCCCCGGAAGTGTTACAGCCACCGACTTAAGACGATCTTGGTAAACGTGTCGATGAGATGACTGAACAGTATGGCAAATTTCGCCGAGGAGACATGAATTTAGACGATCGCCTCCAGGAAACCGAGTTTCTTTACGTTCTACACCCGGAGCATAATCCTCAGAGTATTAAAGACTTGGTAGATGACATGATCGAAAATTTTGATCGCAACCACGATAAGGCGTGAGGAAGAATTCGCCTCAATGGACGACAATGGCGATGGCGTAGTTACACAGGAAGAGTTAACAAAATACTTGGACCCAACACACGAACAACGCGCTATCAGCGAGGCTAATTACCTGATAACTATGGCGGATCGTGACAGCGACGGGTATATGTCAGAGAAAGAGATGTTGATGAACTATAAGTTATTCACAGGAAGTAGCATGGCAAATTACGCGGGATATTTACACGACGAATTTTAAAGAGTTTACCCCACGTCCGATTTGAAAACAAAATTTTTTTATTCCATTAACTGAATATATGTCCTGTAAGTAAAATATTAATATTCTAAAGAGTGAATTTATTTAGGAATGGCAACAGTCAGCAAGGGAGTGTTTTCGTTTTGTTCTACTTTTGTAGAGGGTTATTTTCTGTTCCTTTCTCCCTCTCAAAATATTTTTGCCTAATTTCCTTAATTTCTAATGCTAATAATGAGTTTTTGGTTGGATTTTTTAAAACTTATTCCCTTTATAGGTCGAAATAACCGATTCCTTTCATTGCTTGAGCAAGGGTTGGTTGGGTAGTCTGTAACATGTAAAATTTTTGCACCGACCGAGGTAAACCCCTTTTTCCAGGAATACAGGCATCAAGAGTTTAAGTTTTCTTTGTTACGTTGGGCACAGAAAGTGAGCACCAAGTCTTGAATGGCAGTCATATCTTCATTTCGTTTACACGAATATTGGTATCATTTGTTACTAAGTTCCATTAGTATCACCCAACTAGTGGACTAAAGCAAATCCTGCATTTTTATTGGCTACGCTACTAGGGGTCTAATAGTAATAGTCATCGAGTAGCAAAATTTGGGTTTTTCTTTGGTTTTTTCCCCTAAAAAATAGTTCTTCAACTTGCATTTGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZUC2	45 kDa calcium-binding protein OS=Danio rerio OX=7955 GN=sdf4 PE=2 SV=1
Q66JA6	45 kDa calcium-binding protein OS=Xenopus laevis OX=8355 GN=sdf4 PE=2 SV=1
Q5BKL9	45 kDa calcium-binding protein OS=Xenopus tropicalis OX=8364 GN=sdf4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10827 all species →	RETICULOCALBIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025571-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.