Gene detail

Detailed information of FUN_025614-T1 in Siderastrea siderea

Genomic Location: contig_24:5819419...5838919
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025614-T1

ATgtcaaaaccattctttctcaaGAGTGGACCTAACACCAAGGCAAGGCAATCTCCTCTGAGCTGCAATTTTGAGGACAACCATGCTGTTCCAAAACATGGTGTCCATCCACCTGATCTGGACCTGGACAGTGTGTCAGACAGTGATGGGAGTAGCTGGAAAAACATGGGAGACATTGACGCCAGCAGTCCATGCTCTTCAACTCCGAGGAGCCTATCCCCACTTAGTTCACTGAGCGGCAGTGGAGATGGACAGTACACTAACAGAGCATTTGAGTTCCCTAGTGAGCCAATCAGTCCATCTCGCTGCAGGAGTGTGCGCTCCCCAGGTTTGAGACCAAGCAACTCCCTCTTGGAGGTTTCAATTGCCAACTTGCCGCCAGAGTCTGAACTGAAGCAGTGTTTGATGAAAATTCGTGAACAGATGGCTTTGAGTCTTGTTCGACTTCAGGAGCTGGAGGAACAGGTGAAAAATGTACCTACTTTGCAAGTTCGTATCTCAGTGTTACAGGAGGAGAAGAGACAGCTTATTAAACAGCTGCAGTCAAAAAGTGCACGGAAGAGAACCAGGTCAGCCGATTACTCGGGGTACAACAGTGTGCACTCCAGAGGGTCCAAGAGTGATACTgaaaatgatgatgacgattaCTCTCTTCTTAAGAAAAGACTGAGAGTAAAGTTGAACTCTGTTGGTGTTGGGGACTACTCAATTAATGATGCTTGCTCCTGTGGTAGCACAAGTTCAGCTGTtgaaaagaaactattgaagTCTGTATGTGTGGGTACAGAGAGTTATCCAAGCCAAGATGCCATTGATCAAAGCAACTTGCTGTCGAGGGCAGAGtcaaagaaaccaaaaacaagATCCATTGGGGTTGGAATGATGAGATCTTTCACAAAAGATGCTGGTGTTGGGGAGGGAAGAGTGCTGCTGTATACAGAGCAGAGAGGGATTCAGGCATCAGTGGAAAAGAAGGACTCCTCCTGCAATGCTCTACCCGCTGTTGTCACGACAGATGCAGCTGTTTCTGCTAAGCCATCATTACGTTCGACAGGAACCAGTACAGAGCTTCTTAGCTCAGTTGACAGTCTTTACAAAGGAACTGCGAAGAATCCCTCAGACACAACAGCCAGTATTGGTGTTCAGACAAGTGGAGGTTCTGGAGTTACAACAGTTTCCATTGGAGTTGGTATCTGCACTATTGACGATGAACCAGTATGCCGTAAATGCTCCAATAGAAAGTCTCGCACAATACTGAAAACTGTTGATGAGATCATGGCCAATCACATTGATATTCCTCTTTGCAAGTCAGTTGGTGTGGGAGATACAAGCCTTGATGATAACTATCTTTGCAACCGCTGCAGCAACCTCCAAACAAGAACAATAGGTGTTGGAGAAAAGATTGAGCTTAGAAATGTTGCTACTGGAGATTGCAGCATTTCCGAAGTGCAACATTGTGATCATTGTAGTAACATTAAGACAAGAACTGTAGGCTGTGGCAATGAACAAATCGTTACCAGAGACACTGGGGTTGGCGAGCAGAAAATTAATGACAAGATGTTGTGTGACCACTGTTCAAACTTGGAAACAACGTCTACTGGAACAGGTGATTTTCCACTGGAGGAGAACATTTTTGTCTGTGATACTTGCAGCAGGATGCAAAACAACCCAGAGAACATTACAGAGAACATAGTGGCTGCAGCAGTGGAATCAGCAGCTCCAAACAGTCGCGTCTCTGTAGATGAGCAAGTAGCACCCTTAAGAAGACAAAGCTCTCTTAAATATGGCACACGCACAATTGGCATTGGTAGCTGCAGCATAATGGATTCCTTCTGTAGTAAATGTGACGGTTTGCGCACTAGATCTATTGGAATTGGCAATGGCAATGTGTCAGTTGATGTGATTTGTGACAGATGCTCcaataagaaaacaaaatctGTGGGAACAACCTGTGAAATTGTAGAAACAAGGTCGCTTGGTGTCAGTGAGTGTTGCATAACAGATAATTTCTGCGACAGATGCATGAACGTCAGGACACAAACTGTTGCTATTGGTGACTGCTGTGTAACTGATAGTTACTGTGAGAGATGCTTTAATGTTCAGATGCAGTCCATCGGTGTTGGAGACTTTGACATTAACATTGATGATAACCCTCCAGTCATTCAAGCTAATCTTGTGTCTGTTGATAATAATACTAAATTTGACTCTAACATGAACATAAAAACTAATAAGGCAATCACAGGTCAGAACACAGTTAGACACTTACAGTCTAAGCAGCACAGTATGTATTCCAATGAATCTAGGGACAGCATAGGCATAAAAAAGAGCCATACCCACAGCAAAGAGAGTGACCTTAATGAGTCAGATGGCAGTATTGACAATGACAACCCCAGCAGTGACACCGCAAGCCAAACCAGTGAAGTGTTGGATGTGCCTCCTTCTCCCGACCGGGTTAGAATCACGGATGAAGTTATTGTGGCATGCAAGCTGTTGAATGGACACCTTTACAAAGGAAAAGAGATTGGAAGGGAGCAAATGATTTCGTGCATGAGTACCGTGGAGAATAACTGGTTTCACTGCGTCAGCTCAAAAGATTGTGACTCAGAGTTGATCAAAGGTCTTCTGAAGATATTCAAGAATCAAATCCACATGCTCTTAGAGACCATCGTCAACTTGGTCGACAGCAATGGCAACAATGCGCTACACTACGCTGTTTCATTTAGAAACTGGAAGGTGGTGGACGTGTTACTGGGCACAGGAATCATGAACTTAAACTTGCCCAACAAGGCTGGATACTCGCCCATTATGATGGCAGCGTTAGCTGGAGTCACAAAAGATGACAAAGAAATTGCCAGGAAAATGTTTCGATCAGGAGACGTCAACAAGCAAGTTGAAGATACAGGACAAAGTCCTCTTATGCTGGCTGTCAGTCGTGGAAGGATGGAAATGGTGGAGATCTGTTTGGAGACTGGAGCTGATATTAATGCACAAGATGAAGATGGATCAACAGCGCTGATGTGTGCATGCGAACATGGTCATCTTAATATTGCCAAGCGTCTGCTTTTGGAGCCGGACTGTGATGCATCCACCGAGGACAACGAAGGGAGCACAGCTCTCTCCATTGCAATGCAGAGGAACTTCAAGGACTTAGCTTTGTTGATTTACGGGAATGTCAGCTTTGATCCAATAGGAAAACCTCGAAAGAAACTCCCTGGCGTGCCTTGCAAAGCGTCTTGA

Transcript

FUN_025614-T1

CTCTGCACTGAAATATACATCCTCTGCGGGGTCAGCCATGTTGTGTTAGAAAAGCCGCCGTTGACACGAAAACAGAATTGAATTGCATTCCTAAGGATTTGCAAACAGTTCTGCTGAGTTTTAATACAAAAGACAAAGATAAAGACCGCCTGGTCACAGAGGAATCTATCACAGATATTAAGAAAAAATCGCGTTTAGCATCGCGTTTTGCTGGAAATTCATTCGCAAGGTCGTAGATAACTGCTCGTTATAAAGGGCCCACATGATAGCGGAGGAGAGAGACTCTAGTCCTCATTCCTTTCAGTGTGTATAATAGCAATgtcaaaaccattctttctcaaGAGTGGACCTAACACCAAGGCAAGGCAATCTCCTCTGAGCTGCAATTTTGAGGACAACCATGCTGTTCCAAAACATGGTGTCCATCCACCTGATCTGGACCTGGACAGTGTGTCAGACAGTGATGGGAGTAGCTGGAAAAACATGGGAGACATTGACGCCAGCAGTCCATGCTCTTCAACTCCGAGGAGCCTATCCCCACTTAGTTCACTGAGCGGCAGTGGAGATGGACAGTACACTAACAGAGCATTTGAGTTCCCTAGTGAGCCAATCAGTCCATCTCGCTGCAGGAGTGTGCGCTCCCCAGGTTTGAGACCAAGCAACTCCCTCTTGGAGGTTTCAATTGCCAACTTGCCGCCAGAGTCTGAACTGAAGCAGTGTTTGATGAAAATTCGTGAACAGATGGCTTTGAGTCTTGTTCGACTTCAGGAGCTGGAGGAACAGGTGAAAAATGTACCTACTTTGCAAGTTCGTATCTCAGTGTTACAGGAGGAGAAGAGACAGCTTATTAAACAGCTGCAGTCAAAAAGTGCACGGAAGAGAACCAGGTCAGCCGATTACTCGGGGTACAACAGTGTGCACTCCAGAGGGTCCAAGAGTGATACTgaaaatgatgatgacgattaCTCTCTTCTTAAGAAAAGACTGAGAGTAAAGTTGAACTCTGTTGGTGTTGGGGACTACTCAATTAATGATGCTTGCTCCTGTGGTAGCACAAGTTCAGCTGTtgaaaagaaactattgaagTCTGTATGTGTGGGTACAGAGAGTTATCCAAGCCAAGATGCCATTGATCAAAGCAACTTGCTGTCGAGGGCAGAGtcaaagaaaccaaaaacaagATCCATTGGGGTTGGAATGATGAGATCTTTCACAAAAGATGCTGGTGTTGGGGAGGGAAGAGTGCTGCTGTATACAGAGCAGAGAGGGATTCAGGCATCAGTGGAAAAGAAGGACTCCTCCTGCAATGCTCTACCCGCTGTTGTCACGACAGATGCAGCTGTTTCTGCTAAGCCATCATTACGTTCGACAGGAACCAGTACAGAGCTTCTTAGCTCAGTTGACAGTCTTTACAAAGGAACTGCGAAGAATCCCTCAGACACAACAGCCAGTATTGGTGTTCAGACAAGTGGAGGTTCTGGAGTTACAACAGTTTCCATTGGAGTTGGTATCTGCACTATTGACGATGAACCAGTATGCCGTAAATGCTCCAATAGAAAGTCTCGCACAATACTGAAAACTGTTGATGAGATCATGGCCAATCACATTGATATTCCTCTTTGCAAGTCAGTTGGTGTGGGAGATACAAGCCTTGATGATAACTATCTTTGCAACCGCTGCAGCAACCTCCAAACAAGAACAATAGGTGTTGGAGAAAAGATTGAGCTTAGAAATGTTGCTACTGGAGATTGCAGCATTTCCGAAGTGCAACATTGTGATCATTGTAGTAACATTAAGACAAGAACTGTAGGCTGTGGCAATGAACAAATCGTTACCAGAGACACTGGGGTTGGCGAGCAGAAAATTAATGACAAGATGTTGTGTGACCACTGTTCAAACTTGGAAACAACGTCTACTGGAACAGGTGATTTTCCACTGGAGGAGAACATTTTTGTCTGTGATACTTGCAGCAGGATGCAAAACAACCCAGAGAACATTACAGAGAACATAGTGGCTGCAGCAGTGGAATCAGCAGCTCCAAACAGTCGCGTCTCTGTAGATGAGCAAGTAGCACCCTTAAGAAGACAAAGCTCTCTTAAATATGGCACACGCACAATTGGCATTGGTAGCTGCAGCATAATGGATTCCTTCTGTAGTAAATGTGACGGTTTGCGCACTAGATCTATTGGAATTGGCAATGGCAATGTGTCAGTTGATGTGATTTGTGACAGATGCTCcaataagaaaacaaaatctGTGGGAACAACCTGTGAAATTGTAGAAACAAGGTCGCTTGGTGTCAGTGAGTGTTGCATAACAGATAATTTCTGCGACAGATGCATGAACGTCAGGACACAAACTGTTGCTATTGGTGACTGCTGTGTAACTGATAGTTACTGTGAGAGATGCTTTAATGTTCAGATGCAGTCCATCGGTGTTGGAGACTTTGACATTAACATTGATGATAACCCTCCAGTCATTCAAGCTAATCTTGTGTCTGTTGATAATAATACTAAATTTGACTCTAACATGAACATAAAAACTAATAAGGCAATCACAGGTCAGAACACAGTTAGACACTTACAGTCTAAGCAGCACAGTATGTATTCCAATGAATCTAGGGACAGCATAGGCATAAAAAAGAGCCATACCCACAGCAAAGAGAGTGACCTTAATGAGTCAGATGGCAGTATTGACAATGACAACCCCAGCAGTGACACCGCAAGCCAAACCAGTGAAGTGTTGGATGTGCCTCCTTCTCCCGACCGGGTTAGAATCACGGATGAAGTTATTGTGGCATGCAAGCTGTTGAATGGACACCTTTACAAAGGAAAAGAGATTGGAAGGGAGCAAATGATTTCGTGCATGAGTACCGTGGAGAATAACTGGTTTCACTGCGTCAGCTCAAAAGATTGTGACTCAGAGTTGATCAAAGGTCTTCTGAAGATATTCAAGAATCAAATCCACATGCTCTTAGAGACCATCGTCAACTTGGTCGACAGCAATGGCAACAATGCGCTACACTACGCTGTTTCATTTAGAAACTGGAAGGTGGTGGACGTGTTACTGGGCACAGGAATCATGAACTTAAACTTGCCCAACAAGGCTGGATACTCGCCCATTATGATGGCAGCGTTAGCTGGAGTCACAAAAGATGACAAAGAAATTGCCAGGAAAATGTTTCGATCAGGAGACGTCAACAAGCAAGTTGAAGATACAGGACAAAGTCCTCTTATGCTGGCTGTCAGTCGTGGAAGGATGGAAATGGTGGAGATCTGTTTGGAGACTGGAGCTGATATTAATGCACAAGATGAAGATGGATCAACAGCGCTGATGTGTGCATGCGAACATGGTCATCTTAATATTGCCAAGCGTCTGCTTTTGGAGCCGGACTGTGATGCATCCACCGAGGACAACGAAGGGAGCACAGCTCTCTCCATTGCAATGCAGAGGAACTTCAAGGACTTAGCTTTGTTGATTTACGGGAATGTCAGCTTTGATCCAATAGGAAAACCTCGAAAGAAACTCCCTGGCGTGCCTTGCAAAGCGTCTTGAACACCGAGCATGTTAACATGTTGGATTTCCCTTCGCCATTTTGTTGGTTCTGAAACTGCAGTGGAATTCATAGTTACCACTGTTTTTGAAGCCTCAGTCTGAGACGATTACCTACAGCGTATAAACTTGTttatgcaaaacaacaaaagtaaacaaggCAGCGACTAAAAGCGATATCTGCCTTGGGACACTTGCGATCAATCAATTTCACATTCATTTAGTACTTTTAAGTACTATGAAGAGCTTTTACGTATATTTGTGAGTACTTATATGTACTGTTCTGGAAATTTGTACAAGCCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR047184 all species →	Family	KN motif and ankyrin repeat domain-containing protein 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24168 all species →	KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22808	KANK; KN motif and ankyrin repeat domain-containing protein	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.