Gene detail

Detailed information of FUN_025651-T1 in Dendrogyra cylindrus

Genomic Location: contig_56:2635199...2649056
NR annotation: XP_020601070.1, APOBEC1 complementation factor-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_025651-T1

AGTTGAACTACACGTGATGACTATAAACCAGCTCGCGACTCGGAGCTCTCGACAAATGGGAGAAGAAATGGCGACCAAGCTCGAAGAGGGCTCCGATAGAGGCACAGATGGAGTTGCCGGAACGCCCAAAGAAGCGGCTCTGCGAGAGCTGATGGAAAGGACGAAATACCCGATACGGCAATTCAATGGACAACGGAGATATGGGCCTCCGCCGAGCTGGGACGCACCTCCCCCTCCACGTGGATGTGAAGTTTTCGTAGGGAAAGTTCCTCGAGATTTGTACGAGGATGAATTGGTTCCCGTATTCGAGTCTTTGGGCGAAATCTACGAAGTCCGGCTAATGATGGATTTCAACGGACAAAATCGCGGCTATGCGTTCGTTGTTTACACAAACAAGGAAGACGCCAAGAAGAGTGTCAAGACTTTGAACAATTACGAAATTCGCAAGGGAAAATGTATCGGGGTTTGTAGCTCGGTCGATAACTGTCGCCTGTTTGTAGGTGGCATTCCCAAGAAGGTAAAGAAGGACGAAATCATGAACGAGATGATTAAAGTCACAGACAACGTCGTGGATGTAATTGTTTACCCATCGGCGCAGGATAAGACGAAGAACCGAGGCTTTGCGTTCGTGGAGTACAGCTCGCATCGCGATGCCGCGATGGCTAGAAGGAAACTTATGACCGGCAAAATTCAGCTATGGGGACATCAGATCGCTGTAGATTGGGCTGAACCGGAGCAAGAAGTCGATGAAGAAATTATGGAtcagGTGAAAGTTTTGTACGCCCGAAACCTTTTATTAAGCACAACAGAAGACACGATAGAACAGGTCTTcagcaaatttggcgaggtagAGCGAGTGAAGAAGATCAAAGATTACAGCTTCATCCACTTTCGGACGAAAGAACAGGCCAGGGCAGCCTTAGAGGCGATGAACGGCAAAGAACTTGATGGGAATGAAATTGAGGTGACTCTTGCCAAGCCTGTGGACAAAGACCATCGCCAAGCCAAGGCGGCAGCAAAGGCTGTGATGAGTGCAACAACATACCCCAGCTTCACGCCGTACGAGTACCCAGCAAGCACTGCTGCTTATGGTTTCCCAGCATACAGCAGTCAGTACTTCATGTATGGCACTCCAATGACAGCAGGAATGGGGGGTGTGAGGCCTCCTTTTGGAATGGTGCGCACCAGAGGTCGAGGACGTTCTGCTGCTGGTAGCAGGGCGGCAGGGAACAAAGGAGTGTATTTACCGTCTCCCAGTGGTTATCCATTCAATGGCTTTAGAGGCTACTATCCTGCTGTGCGAGCAGGCTGGTATGGAGAAGGGTACGGCAAGAGAGGAGGCAGACAGGAGGAACGCATGTTTGATCTGGTGCCGGGAATGGAGTTGACACCCACTAACCCTATGACTTTGAAGCCACATGCCCTCAAATCACCGGCACAGGTTTTAGAGGATGTGTGCCAGAAAAACCAGTGGGGAAGCCCAGTTTACACACTGCATAGTACTGTGGGACCTCAGGATATTCAACTGTTTCTTCACAAGGTGTCCATTCCTGGATTAGCCACCCAATATCAGCCTCCCAAACTGTGTCGCACTGTAGATGAAGCCAAGAGTTATGCTGCGGAATACACACTTCAGCAGCTTGGTGTGCCAATAGAGGTGGTGACTACCACGGCAGCAACGGATATGCCGCCCACTACTGGCACCCCAGTACCGTCTACGGCAACCTATGCAGCCCGCCCTTTACCCCCAGgGGCATACAGCCTCCCGAATTCTGGCCGTCCAATCAGTAGTGGAGATGCGGGTTCGTATCCCTCTGGCTATGTACCTATTAGCAATGCTCCGAGCAGTGTAGCGCCTGCTGCAGTGGTCGCCAAACTGCAGGGTTCGTGGCCAGGTGGGGTACCACCCAATCAGGATGGAGGAATGTACGGCAATTATGATGGTTACCCTGCCAGTGAGCAGACAGGCTATCCACAAAATATTTACCAACAATATTAGGTGCTCAAATTTCTAGAGACGAATAATCACTGATATGGTACTGGTGGACAAGGCAAGCAGAAACTACCATTTGATAAATGTTTAGAAAAATATTGGTTATAGTATTACGTTTATTAGTTTtaagttttgttgtttgggcttCAGTGGAAGGTCTAGTGAACAAAATAGTCATCGAGTGTGCTTTTGACAGCATGGACGTGCCTTTGTTTTTGTTGGTGGTTGTGTACAGTTTAGTTCTTTCTTTGCCTTGTGACCCAGACATATTTAGTGTGGTTTGTCTTCAATTGAATGGGATTGGGGTGGTGGCAGAATGTTGTTCTGTGAACAATGTGTATGTTTTAATGTCTCATTATGTATGCTGTAGATTAGTTTGAATTTTACAAGAGGGTTACGTCAAATGTATGGCATATTTTCTGCTGGTGAATGTGATCTTGTTTTTTGTTGGTGAATTGCCAGATGAATGTCAGAATCAAATTGAAGCCGTCTGCAAGAAGCAGAGCAGCCGCAGTTTTATTATCTTAATTTTCTTTGATTGTATTAAGACCAGCTTCATAatctgtttttaaaagaaaatgatttttttttcagtgctttaAGTCAGGACACTATGGTTTTACAGGAATTTAAGAAGAATTTCTAAGAGTCGAACAAAGCATATTTCAATATTATAAATTTATTCATACTTGCGTCTTACGCGCTATTTTATTGTCTTATTTCCATATCCATTTTAAGTCGTCAAGAacacagagagagagagagaaagaaaaacgAGTTTTAGTTTATATTTTTGTTAGAGAAACTCAGATATTTATAGACAAACAAGGCTCGCTGTTGGTCTTGGTTACGTGGAACTGAAAATGCTTGAGAACTGGACAGTGTAAATACTAAAAAATCCCTGCCCTTGAGGCATTTTAAACACACTCGTGAacttgcattgcattgcatacTACAGGATTCTGTGCAAGTGGTCCTGTCCAAGTCAAAAATAGTATAGCTTTCACTGAGCGATGATGTGAATGATGGTGCAAAATCATTAAGCGGAGAGAATTTGATTTGAATTACAATCTTCTCGATCGAGAGGGAGAAATATGAGGGACAGTACCCTTTCACAATTCTGTGCAGATATTTCACAACGCATCGTTCATCCAAGCACTTTGTATATTTTCGTTGCAGGGTACCTTGCAATTGCCATTTCGTGTACAGTTCAAAGCTCTTAAAAAATGAAATAGTTCTTTTATAAAATTGCTCGGAGTTTGTTTGATTCTGTGCCAAGGGCTCAGAGGATGGCTTTGGAAGAATCGCGCTAAcagccaaaacaaaaatgttatgTTGCGAACCAATATTGCGAATGTGTTTGTGCCAAGAAAATCTTTATTAAATTATGTTGCAAACAACAGCGACTTCGTCAGGTCATGTCAAATATGCCCCGAAACATTTTTCCAACCCTTCCTTTCAGCCCTTTGTCACGTCAGTCAAAATTGAAAGGTTCCGTTCTGGTGTAAATTCACTTTGTTTATAAGATGTTTATTCTAATACCGCTGTACAACATGaaagaaacaaaatcaccagACGGGAGCGAGCGTATTGGAGTTGGGGAAGTCTTTGAAATCTCCCATTTCACGTGCCGAATTTTAAGTTCCAATGAAGATGCCAACACAGAGAAAGACACGTCTATTTACAATTTGCCAAGAAACTGTAACAAACGGTGCCGATCCACAGAGCCTGATTTTAATGACCAGGATAGTCGAATGAACGTTAATTACATTTATTAGGTGATACAATGGTTAATTGTTTTAATGAGTTACTGTTAGGAAAATCTATGGGTAAGAGAAAAGGATGGGTACGTGTTAGGCGGGTGCTGGAACTCGCGCGacagtgattttttttcctgGGCAAACTTTGGTGCGTTCTGGTTCGTTTCTTGATGTTGGCTTTTGTCTTAAACTTTCGGGGTCTCTACTCAAGCGTGGAGACTTTTTTGTTAAGTACGTTGTATCTTGACCAAACTGAGAATATCGGTACTTCTTGCCCACCTTTTGAATTTCAATGCGCGAGTTTCCGCTCTGCCTAATGAAGTACGAACTTCGAGGGATCTAAAAAGAAAACATAGCTTGATAACAAATGTTAGCGACATTTAGATAGTTGCGTAGCTTGCGGCAGAACGACAACCGAGCCAAGCCGTTTGTTATCTTACAGGGTTGGTTaggttaataaataaataaacaaataaatataaatgtaGTATAATTATAGAGCAAATAACGGTACAATAAGCCACCAATAAAATCCCACACATGGTACCGGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQ94	APOBEC1 complementation factor OS=Homo sapiens OX=9606 GN=A1CF PE=1 SV=1
Q5R9H4	APOBEC1 complementation factor OS=Pongo abelii OX=9601 GN=A1CF PE=2 SV=1
Q923K9	APOBEC1 complementation factor OS=Rattus norvegicus OX=10116 GN=A1cf PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14709 all species →	DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR044461 all species →	Domain	A1CF, double-stranded RNA binding domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR006535 all species →	Family	HnRNP R/Q splicing factor	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245 all species →	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025651-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.