Gene detail

Detailed information of FUN_025661-T1 in Acropora pulchra

Genomic Location: ptg000019l:5405462...5414222
NR annotation: XP_029183226.1, AP-2 complex subunit mu-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_025661-T1

TGTTATAGAGGTTCGTTTAGTTAAGAGAGTGAATCTGTAGGTTTCCTGCCGCTAGAAAGTTATTCTCTTACTTCCAAGTGTTAGCAGAGCAGTTTAAAGAAATCATGATTGGTGGGTTTTTTGTATACAACCATAAAGGAGAAGTGCTGATATCTCGTGTCTACCGGGATGATATTGGTCGAAATGCTGTGGATGCCTTTCGAGTCAATGTTATCCATGCAAGGGGCCAAGTGCGCTCCCCTGTCACCAACATTGCCAGGACAAGCTTTTTTCATATTCGGCAAGGGAATGTCTGGTTGGCTGCAGTAACAAGACAGAATGTAAACGCTGCCATGGTCTTTGAGTTCCTGAATCGAACTGTTGAAATCATGATTTCTTACTTTGGCAAGGTCACTGAAGAGGGAATCAAGAACAATTTTGTCCTGATCTATGAGCTGTTAGATGAGATTGCAGACTATGGATACCCTCAGAAAACAGACACTGCTATTCTGAAGACTTTTATAACTCAACAAGGAATCAAGACACAGACGCGAGAGGAGCAAGCCCAGATAACCAGCCAAGTTACAGGGCAAATTGGTTGGAGAAGGGAAGGGATCAAGTACAGAAGAAATGAGCTTTTCCTTGATGTATTGGAATCTGTTAACCTTCTGATGTCTCCACAAGGCCAAGTTCTCAGTGCTCATGTGTCAGGCAGGGTGGTGATGAAGAGTTTCTTATCAGGGATGCCTGAATGTAAATTTGGAATGAATGACAAACTTGTGGTGGAGAAACAGAAAAGTGGAGCGGCAGAATCCTCTTTTGACCCACAAAAGAAAAATACAACAAGCAAATCAGGAATTGCAATTGACGATTGCACGTTCCATCAGTGTGTAAAGCTTAGCAAATTCGAAACAGAACGTGCAATCAGTTTTATTCCCCCTGATGGAGAGTTTGAGCTCATGAAGTATCGCACTACGAAGGATATTAGTTTACCATTTAGAGTCATTCCATTGGTTAGAGAAGTAGGGAGGTCACGAATGGAGGTCAAAGTAGTGATCAAATCAAACTTCAAGCAGTCAATCTTGGGCCAGAAGATAGAGGTGAAGATTCCCACTCCTCCAACTACTGCAGGTGTGCAAGTTGTCTGTATGAAAGGAAAAGCTAAATACAAAGCCAGTGAGAATGCCATTCTTTGGAAAATCAAAAGAATGGGTGGAATGAAGGAATCGCAGATCAGTGCCGAGATTGATCTCATGGCCACTAAAGACAACAAGAAGTGGGCTCGGCCACCAATCTCTCTCAATTTTGAGGTTCCATTTGCTTGCTCTGGTCTGAAAGTTCGCTACCTGAAGGTTTTTGAGCCCAAACTGAATTACAGTGACCATGACACTATCAAATGGGTGCGCTACATATCCAGATCAGGACTGTATGAGACAAGATGCTGACATTCTGTCGCCCGGCCCTTGAATGACAATAAGGCTATTGCTTACTATGTTCTGATATAGGCTTCACTGTAACAGTTTATCGGGTTGGTCTTGTTGTATTGTAAGAAAACCAGCAAAGCTTGCTTGCTTTGATGAGCCAACCAACATAGCAACAATTTAAATCTGGCTGTTATTTCTCGACAGAGTAGTAATTCATTCAGTAAAAGAGTTAATTAGTTTTGATACTGTCATTTTTTTTCCTTTTGTTTTTGTTGCTGCATTGAAAAATATCGTCCTTTTACAAATAAGTTATGGCCCATTGCTCTGATGAAGGGCTAATACTAAAGTGCTAGCTTTATCCTTTTTGCTGTGGTAATTTTGATGTACCATATGCGCGTTTGTCTTCCCCACCGACGTAGCACTTCAGACTAAACCTTTCTCTGTCCACCCACAGGGGATTTTCTCTAGGTCAATAAAACCTCTAAAGAAATGCAACACATTCTCAAGATTGGCTGACTACTAAACTAGCTGGCCAAAAGATAACTCCTGCTGGGGGTTCAGAAGGGGACTTGAGTCATGTCTTCTTGCACGGTGCTGTTTCTAAATGAGGTAGGCAGTCACGTGACCGCCTACACCAAGTAGTTACGCCATTTAAACTCCCGATTCAGTACGTGACTGCCTACACAAAATAGTTACCTCTATTTATATCAACGACGAATATGTAAGGTTGCAGCTCAAACAATGAGCGTCAGTGTTCAATGTCTTCCATAAAACTATCACAGTTAAGTTAAAAGGTACCAAGCCAATCAAATAGGAAAGAACTTAAATGAAAAGAGTCAAACAGTAAATAGGAATAGTGATTATTTTATTCATTAATGTCTAAGGTACGGGATTTTTTCGTTGGGATCTTTTAGGTTGTCAAACTACACCACCCTCCCTGGTATACACTCTACCCTAGGGAGGGCCAGTTATCTATGTTTTACTAATGATGCTGCAGTTCTACTTGGACCCATATATCTGACGGGCTTCTTAGACATTTGGCTCCATTGGAGAAACAAGACCCAGCCGTAGTTGTCTAAAGGTGCACTTAAAAATTATGGGTGATGACAAAACATACTTTCCAGACCCCATGAAGAAGAAGCGGAACCGGAACCTGATACCATTCATGTTTTTTGCGTACCCCATTCGATTCTTTGAAAAGAAATTCAGGAACCCTCCCCCTGTCAAACAATACCAAAATACGGCAAATGAAAATTTCTTACTTTTATTAAGAACCCCCCCCCCCCCCCACCAACGCTCTTTTTGACCTTTCAAGGCCCCCCTTCCAGATTGCTCTATCAAAAAAATATTGAGGGCCTCCATTTTCTCCTCTACCTCCCACTACGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZMP6	AP-2 complex subunit mu OS=Gallus gallus OX=9031 GN=AP2M1 PE=2 SV=1
Q6P856	AP-2 complex subunit mu OS=Xenopus tropicalis OX=8364 GN=ap2m1 PE=2 SV=1
Q3ZC13	AP-2 complex subunit mu OS=Bos taurus OX=9913 GN=AP2M1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928 all species →	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01217 all species →	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR043532 all species →	Domain	AP-2 complex subunit mu, N-terminal	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan
IPR050431 all species →	Family	Adaptor complexes medium subunit	Interproscan
IPR018240 all species →	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR001392 all species →	Family	Clathrin adaptor, mu subunit	Interproscan
IPR043512 all species →	Domain	Mu2, C-terminal domain	Interproscan
IPR011012 all species →	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR022775 all species →	Domain	AP complex, mu/sigma subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529 all species →	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030122 all species →	Cellular Component	AP-2 adaptor complex	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11826	AP2M1; AP-2 complex subunit mu-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.