Gene detail

Detailed information of FUN_025700-T1 in Acropora pulchra

Genomic Location: ptg000019l:5862686...5876944
NR annotation: XP_029203948.2, uncharacterized protein LOC114968005 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025700-T1

ATGTCATCTGCTACTGATGGACAATTTCTTGTGAAAGAAAGCATCCACTTTCCTGGTGACTATGTCCTTTTTGTTCGTGTCAATGGTGAAGTTCAACATTACAGAGTGCTTTGCAAGAAGAACATGATGTTCACCATTAATGGAGAACACTATTGTGACACTATCAACAATTTAGTCAAGTTTTACCAGAACAATAAAGGCTCTACACTTCCAATTAAACTGACAGACCCAATTAGCAAAACAGAGGCCACTCATTGCTCAAATGGGGCATCTCTTGATGATGGAGGCTCTGCTACAAATGGCACTCTGCCAAGACCACGACTGGAAACCAGTGCATTAGCAGAAATCCATCTTCAAGTGGAAATTGAGTCAAGGGCCTACTCACTCCTTGCAAATCCTTTTGATCAAATACAGTCTCTTAAAGAGCAAATTGAGGAGCTGACTGATGTGTCAACAGACTCTCAACTCTTACGCTGGAATGACAAACCACTAATAATGAATGATTTCATCCTTGAAGACTACCATATCAGAGACAATTCTACGATTGTTGTGCAAGTTCACCCTTGGAATGAAGAGTGGTACATTGGCAAGTGTGCTTCAAAACAAGTTGAAACTGGTGTTAAAGAACGTAATGTAGCTGATGGAAGGTTCCTCATCAGAGATAGCACTTCAACACCTGGAAATTATTGTCTTCATGTGTGGTGGAAAGGCAAATCAATGTCTTACATGATAGAATGCAAGAAAGGACTTCTTAGAATTGGAAGCAGTCTTCAGTTTTCCAGCTTGCCCTTATTGGTGAAGTATTACAGAAAACACCGTGGTCCTCTGAAAACACTACTTACGGAGCCTGTAAAGTTTGACAAAGAAAAGAAAGGGCTTATTCCTCTGCGTTTTTTTGCAAGAGGCAGTAAAGCTCGAGCAGCATACAACCGAGCTCTGGCAAATGGCAAAACATGGGATTCGCGAGTGCGAGTCATGCTGATTGGGGAGAGTGGTGCTGGTAAAACAAGCCTCAAGAGGACGCTCAAGGGGGAGAAATTTAACAACCAAGAACCCAGCACACAAGGTATAGAGGTAGACCCCCCCTTAGTGAAGGCTGGAATCAAGCCATGGCAAAATGATGAGAAAAACACTGTTTTCGATCACAAAAGTGCACTGCTTGTGGCACGACAACTCTCAGTGGAGACTCCTACACAACCAAGTCCTCCTGTTGTGAGAGCAAACAAGAGCCCTCAGTCTGCCAGTGTTGAGGGCAGTGAAGAGATTTTCCACTTTAAACCCGCTGTGGATTTGTCCTCACATCGGGCAAAAGAAGTGAATGGCAGGGCTTCACCATGCACCTATGATGACGTCTTCACCGATGATTGTGGGCCTTCAGATGATGTCCCACCAAAGATTGTCACCTTGGTAAAACGTATCCTGCGACAGCAACAACCATCTATGAATGAAGATGAAGAGGTATGGCCCGTGATATGGGATTTCACTGGCCATTTCCTTTTTTATGCCTTACATCGAATTTTCATGTCACAAGAAGCAGTTTATGTGTTGGTTTGTGACCTGAGCAAAGACTTGTTTGAAAGGACACAAACGTGCGCATTACGTCCTGGTCAGTCTGTTCAGCCTGGAAGACAACACAGTATGGTGTGCAGAAGTGAGTCAAGTCTTGATCAGTTGATGAAATGGATGGACTTGGTTCATTCTTTTCAGGATTGTAGGAGTGTAAGTTCCTTTGGCGTTGCCCAGCCACCAGTTATCCTTGTCGGGTCGCATGCGGACAAAGTTCAGGACCCTTGGAAAGCCATGAATGGCATTTTGGACACTTTGCACGGAAAGGCGTTTTCTTGTCATATTGTTGATGAAAGATTTGTTGTGGACAACACCTGCTCCGGTCGACCTTTTCAACAAGAAGATCCAAACATCCACAACCTGAGAAAAGCGATTGTTACCGTGGCCTCCACATTACCTCATAGCAAGCGAGAGATTCCCCTGCAGTGGCTTCAGGTTGAGAACGAACTTCATCGTTTGTCCAAGAATAACTTGAAGCATGTCACGAAAGCAGAGTTCGTGAAAATTGCTGACAAAATTTGCCAATTTAAGGTACTCGAAGACTGTAATCAGCTGTTGCACTTTTTGTGTGATTGTGGAGCAGTACTCTGTTTCAATGCAGCCAGTGGCCCAGACGATTTGTTAATTCTCGATCCACAGTGGTTAATTCATGTCTTATGTGAAATTATGTCCCTTGCGCACCACAAGAATGAATCGATAGCAATCCGTCAGCACCGCCAAACTCTCGCTAAGGAAGGCATCTTGTCCGAAGAACTTGTCAGCTCTGTTTGTCAAGTACTCGGTCTTGAAATTTCCAAAGAGTGTCTTCTTTCTATCATGGAACAGGCGAATCTTGTTTGCCGTTGGGATGTCCCATTTGGCAAGCCAATCTTCTTTGTACCATCCATGTTAACGGCACAACCAGAGCAGGAAATATCGAAATTAAACGCCCATGGTTCGATTGCACCTGTGTATCTAACTTTCAACACTGGTTATATTCCTTACGGTTTATTCGCCAGATTTTTGGTGATGTTTGGCCAATGGGCTTCTCGTGAACATTCTGCCAAAGCTCCAAAGCTCTTTGCAAATGTTGCTCGATTTTTTATTGGCAAGAAGAGCGACTTTACCCTGGTGTTTGTCTCTTTCAAGAGTGTCATCGCGATTCATTTAGTTCATGAAGTGCCAGAAGAAGGTGGAAAAACAGCTGCTGTTTGCCAGGAAATTTGCAGTTGCATTGAGGACATTTTATGTAAACTTCGAAAGGAGTGTCCATGGATGCACTCCATGTCTTGGCAGCTAAGTGCACAATGTGATCTGTGTTTGGGTGACAATGAGGGTCCTGGTGGTTGCTCATGGCATGGAGTTCCTACATGTCGTCAGCCTGACTGCGCTCACTTCATACCTTTGGGTCAAGACCCTTTGCAGTGTACTCGCACCAGAAAGCTGAACACTAACACACGACTCGATAAGCGCAAGCTAAAGCCCTGGCTTAAGCATTTCACTGGGAGTCACTACCCAGAACTGCTGCCTTATAAGCAAGGCCTGGTGTCACTCAACGATCGTCTGTTGCTAGCCCGTGACTTGGGTGTTAGATGGGTTCAGTTGTGTCGTATTCTGTTGGATGATGTCCTCGTGATGCACATTGACCAGGACAAAGATAATCTTTTTGACAAGTGTTTTGCCACTTTGAATCAATGGTGCGAGTCGCAGGGTTCCAAGGCAACTTACACAGCCTTAGGCATGGCTTTAATGCACAAGGACCTTCAGTTTGAAGATCTCTGTAAACGGTACTGTTTGGAATCACAGGAAGTACTGGAAAGTAGCATTTAA

Transcript

FUN_025700-T1

GTTGGAGGATTTCAGTGTGAAGACAGGTGCAGTATTATACGTGCAAATACATCCCTGTGAACACAACTGGTTCTTTGGCAGAATAGAACGTGAACAGGCAGAGAAACTAATGTCATCTGCTACTGATGGACAATTTCTTGTGAAAGAAAGCATCCACTTTCCTGGTGACTATGTCCTTTTTGTTCGTGTCAATGGTGAAGTTCAACATTACAGAGTGCTTTGCAAGAAGAACATGATGTTCACCATTAATGGAGAACACTATTGTGACACTATCAACAATTTAGTCAAGTTTTACCAGAACAATAAAGGCTCTACACTTCCAATTAAACTGACAGACCCAATTAGCAAAACAGAGGCCACTCATTGCTCAAATGGGGCATCTCTTGATGATGGAGGCTCTGCTACAAATGGCACTCTGCCAAGACCACGACTGGAAACCAGTGCATTAGCAGAAATCCATCTTCAAGTGGAAATTGAGTCAAGGGCCTACTCACTCCTTGCAAATCCTTTTGATCAAATACAGTCTCTTAAAGAGCAAATTGAGGAGCTGACTGATGTGTCAACAGACTCTCAACTCTTACGCTGGAATGACAAACCACTAATAATGAATGATTTCATCCTTGAAGACTACCATATCAGAGACAATTCTACGATTGTTGTGCAAGTTCACCCTTGGAATGAAGAGTGGTACATTGGCAAGTGTGCTTCAAAACAAGTTGAAACTGGTGTTAAAGAACGTAATGTAGCTGATGGAAGGTTCCTCATCAGAGATAGCACTTCAACACCTGGAAATTATTGTCTTCATGTGTGGTGGAAAGGCAAATCAATGTCTTACATGATAGAATGCAAGAAAGGACTTCTTAGAATTGGAAGCAGTCTTCAGTTTTCCAGCTTGCCCTTATTGGTGAAGTATTACAGAAAACACCGTGGTCCTCTGAAAACACTACTTACGGAGCCTGTAAAGTTTGACAAAGAAAAGAAAGGGCTTATTCCTCTGCGTTTTTTTGCAAGAGGCAGTAAAGCTCGAGCAGCATACAACCGAGCTCTGGCAAATGGCAAAACATGGGATTCGCGAGTGCGAGTCATGCTGATTGGGGAGAGTGGTGCTGGTAAAACAAGCCTCAAGAGGACGCTCAAGGGGGAGAAATTTAACAACCAAGAACCCAGCACACAAGGTATAGAGGTAGACCCCCCCTTAGTGAAGGCTGGAATCAAGCCATGGCAAAATGATGAGAAAAACACTGTTTTCGATCACAAAAGTGCACTGCTTGTGGCACGACAACTCTCAGTGGAGACTCCTACACAACCAAGTCCTCCTGTTGTGAGAGCAAACAAGAGCCCTCAGTCTGCCAGTGTTGAGGGCAGTGAAGAGATTTTCCACTTTAAACCCGCTGTGGATTTGTCCTCACATCGGGCAAAAGAAGTGAATGGCAGGGCTTCACCATGCACCTATGATGACGTCTTCACCGATGATTGTGGGCCTTCAGATGATGTCCCACCAAAGATTGTCACCTTGGTAAAACGTATCCTGCGACAGCAACAACCATCTATGAATGAAGATGAAGAGGTATGGCCCGTGATATGGGATTTCACTGGCCATTTCCTTTTTTATGCCTTACATCGAATTTTCATGTCACAAGAAGCAGTTTATGTGTTGGTTTGTGACCTGAGCAAAGACTTGTTTGAAAGGACACAAACGTGCGCATTACGTCCTGGTCAGTCTGTTCAGCCTGGAAGACAACACAGTATGGTGTGCAGAAGTGAGTCAAGTCTTGATCAGTTGATGAAATGGATGGACTTGGTTCATTCTTTTCAGGATTGTAGGAGTGTAAGTTCCTTTGGCGTTGCCCAGCCACCAGTTATCCTTGTCGGGTCGCATGCGGACAAAGTTCAGGACCCTTGGAAAGCCATGAATGGCATTTTGGACACTTTGCACGGAAAGGCGTTTTCTTGTCATATTGTTGATGAAAGATTTGTTGTGGACAACACCTGCTCCGGTCGACCTTTTCAACAAGAAGATCCAAACATCCACAACCTGAGAAAAGCGATTGTTACCGTGGCCTCCACATTACCTCATAGCAAGCGAGAGATTCCCCTGCAGTGGCTTCAGGTTGAGAACGAACTTCATCGTTTGTCCAAGAATAACTTGAAGCATGTCACGAAAGCAGAGTTCGTGAAAATTGCTGACAAAATTTGCCAATTTAAGGTACTCGAAGACTGTAATCAGCTGTTGCACTTTTTGTGTGATTGTGGAGCAGTACTCTGTTTCAATGCAGCCAGTGGCCCAGACGATTTGTTAATTCTCGATCCACAGTGGTTAATTCATGTCTTATGTGAAATTATGTCCCTTGCGCACCACAAGAATGAATCGATAGCAATCCGTCAGCACCGCCAAACTCTCGCTAAGGAAGGCATCTTGTCCGAAGAACTTGTCAGCTCTGTTTGTCAAGTACTCGGTCTTGAAATTTCCAAAGAGTGTCTTCTTTCTATCATGGAACAGGCGAATCTTGTTTGCCGTTGGGATGTCCCATTTGGCAAGCCAATCTTCTTTGTACCATCCATGTTAACGGCACAACCAGAGCAGGAAATATCGAAATTAAACGCCCATGGTTCGATTGCACCTGTGTATCTAACTTTCAACACTGGTTATATTCCTTACGGTTTATTCGCCAGATTTTTGGTGATGTTTGGCCAATGGGCTTCTCGTGAACATTCTGCCAAAGCTCCAAAGCTCTTTGCAAATGTTGCTCGATTTTTTATTGGCAAGAAGAGCGACTTTACCCTGGTGTTTGTCTCTTTCAAGAGTGTCATCGCGATTCATTTAGTTCATGAAGTGCCAGAAGAAGGTGGAAAAACAGCTGCTGTTTGCCAGGAAATTTGCAGTTGCATTGAGGACATTTTATGTAAACTTCGAAAGGAGTGTCCATGGATGCACTCCATGTCTTGGCAGCTAAGTGCACAATGTGATCTGTGTTTGGGTGACAATGAGGGTCCTGGTGGTTGCTCATGGCATGGAGTTCCTACATGTCGTCAGCCTGACTGCGCTCACTTCATACCTTTGGGTCAAGACCCTTTGCAGTGTACTCGCACCAGAAAGCTGAACACTAACACACGACTCGATAAGCGCAAGCTAAAGCCCTGGCTTAAGCATTTCACTGGGAGTCACTACCCAGAACTGCTGCCTTATAAGCAAGGCCTGGTGTCACTCAACGATCGTCTGTTGCTAGCCCGTGACTTGGGTGTTAGATGGGTTCAGTTGTGTCGTATTCTGTTGGATGATGTCCTCGTGATGCACATTGACCAGGACAAAGATAATCTTTTTGACAAGTGTTTTGCCACTTTGAATCAATGGTGCGAGTCGCAGGGTTCCAAGGCAACTTACACAGCCTTAGGCATGGCTTTAATGCACAAGGACCTTCAGTTTGAAGATCTCTGTAAACGGTACTGTTTGGAATCACAGGAAGTACTGGAAAGTAGCATTTAAAAGTGATGCATTCATGTGAACCGTACATGGTCATTTTATTCTTTGTGCGACGTATGAAGACTCTGTTTGAACTGTGGCTTAAAGCCCCAAAATATTTAGTGAAACTGTCCAAAGGCAGCTTGAGATGATATATCATGAAGGATGACCCGTTGCAGTCTAGGAATTGAACTGGGCCTTCAAATTTGTAAGAGCAGAAAATCATATTGATCCAAAAAATGTCGAATGACATTTCTGCGGAACGAAGACTGAAACAAAGAGGAATCAAAGAGGATTTTTTTAAAATAAACTTAAAGCCTCCAATCTCGTCAATTTAGTTTAGGAACCCATGACAGTTTTCCTTTTCTTTGGGCCTTGTGATAACACCCTCGAGCTTGAATTACTTTATATTCACAGGCTACGCAAACTTCTAAATGTGATCCTAGTGGGCAAGGCTGATGGCCTCGACGGTATTCCAAGCTGGCTCGTAAAGTTATCAGACAGCAAATGAATTTGAAACGTAACAGAATGACACCTTTCTGAAAATACTATTCACAGACAACCGTCGGTGCGCACAGCATAACCTGTTTTTTCAACGACTCTCAAAAAGAGTTTCTGTTCTAGGCGCATCGTAGTATGGAAAAGTCTGTCAGCCAAGGCTAAGCAGGCCACTACGTTAAATAGTTTTATTCTGGATGATTGTAAACTACAATTTCCTTTTTTGGCACTTAATACAAGATGTTATGTCAAGTTTTTTTGCTTTAAAGTACTCTTAGGTATTGAGACATTATATTTCTAACAGTTGAATGCACACGGCTCCTTAGAAGATCACTTTCTAGTGATAAGCACGCCGTAGTTCAATAAAGTTGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13116	Tyrosine-protein kinase Src-2 OS=Xenopus laevis OX=8355 GN=src-b PE=2 SV=3
P00525	Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain rASV1441) OX=11894 GN=V-SRC PE=1 SV=3
P00524	Tyrosine-protein kinase transforming protein Src OS=Rous sarcoma virus subgroup A (strain Schmidt-Ruppin) OX=269446 GN=V-SRC PE=1 SV=6

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009343 (this species only)
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025700-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.