Detailed information of FUN_025701-T1 in Siderastrea siderea

Genomic Location: contig_24:7127617...7129566
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_025701-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR011010
all species →		Homologous_superfamilyDNA breaking-rejoining enzyme, catalytic coreInterproscan
IPR013762
all species →		Homologous_superfamilyIntegrase-like, catalytic domain superfamilyInterproscan
IPR050090
all species →		FamilyBacterial tyrosine recombinase XerC/XerD complexInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30349
all species →		PHAGE INTEGRASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006310
all species →		Biological ProcessDNA recombinationInterproscan
GO:0015074
all species →		Biological ProcessDNA integrationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_025701-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_025701-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
14TPM > 0
7Conditions
18.4Max TPM
0.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 0.92 12.40
holobiont · low.pH Control.temp 20 1 0.21 4.26
holobiont · control.pH_high.temp 20 3 1.20 18.45
holobiont · control.pH Control.temp 19 2 0.38 5.06
Whole organism 4 4 1.26 2.18
unannotated 1 1 0.07 0.07
live coral tissue/skeleton 1 1 2.11 2.11

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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