Gene detail

Detailed information of FUN_025763-T2 in Acropora pulchra

Genomic Location: ptg000020l:542691...547667
NR annotation: XP_029190569.2, abl interactor 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_025763-T2

TTAGATTCCATCTGCTGTAAAATACCAATATGGCGGATGTTGATACTTCACTTGTCTCATTAATCGATAAAGAAATACCTGAAGGACGACAGGCTTTGAAAGATGGACACGAGAACCTTGCTAAAGTAGCAGCCTATTGTGAGCAAAAGTATTTGGAAACGAATACTCGACATAAATCAGGCAGTAATCGGGCTAAAGCGCTGGAGGAAACAAGAGAGGTGCTTGAAGAGACCAAACGATTTGCGACACAATCGCTGGCTAGCGTGGCTTATCAGATCAACACATTGGCTCTGAATATGTTAGGTTTGCTAGATCAACAAGTCATGAAATTGCAAGACATGGAATCAAAGATAAATCACATTGCTGAAACTGTTGATATCCATAAGGAAAAAGTAGCAAGACGTGAAATTGGTGTGTTAGCTGCCACTAAACCAACAGGGCGGGCACACAGGATCATTGCTCCAGCAGAACAAGAGAAAGTCATACGATACACCAGAAGGGCCACAGATTATTCAATTCTGGATAATTTAGGTCATGGAGTGAAGACCAGTGATAGACTAGACCACCGACATCGTAGCTCAAAGAAACTGAAACCCCAGCAGTCTCAAACAAATAAGGGAACTTCACGGCCAGTTCAAGGAACAGGAACCACAAGGAGGACACCCCATGTTAAACCACCACCACCACCTGTTCCCCCTCCAATGCCTCCATCTGTCCCTACTGATGGGGAATTTCCTGTCCCTCCCCTTCCTGTTTCCCAACCAGAAGTTCCCCAGCCCCCACCGTTTGTAGATGGGATTCCACCACCAGCACCACCCCCACCAGGATTTCCTTCTCCTCCGCCATCATCTGATATCGCACCTCCTGCTCCATCTCCAGTTCCTCCAACCCCACCACCACCACCGCCACCACCAGGACCAACGATTTCCCCACCTCCACCCCCTCCTTTGCCAAATATAGGTGGATCTCCCTCTCCCTCAGATGGAACCTATGAATCAGTGATTGATGCATTGAGTCCATTTCCCCCACCCCCACCACCAGATGCAGAAGATTTATACCAATCACCATCATCATTGCCAATGCCAGCACCTCCAGAGGATATGTACCAGACTCCTCCACCACCAATGGATGAGCCATCCTGGGCACCTGAAAACTACATTGAAAAAGTGGTGTCTCTGTATGAATACACACAGCAGAGAGATGATGAACTTACTTTTCCAGAAGGAGTTATTATTTATGTCATTAAGAAGAACGATGATGGCTGGTTTGAGGGTGTTTCTGAAGGAGGGAAAACTGGTCTCTTCCCTGGAAACTATGTGGAAGTTTGCCTTTAACATAAAAGACAAGAGAAAAATATGCCTTTACACGACATATAAATATAATCTCTGTAAAGTCTCTGACGATATTTTTTTTGAAGTGCATTACCTCAAAATTATTGCTGTTGGTGCCTGTTGATAGTTTCAGAACAATTTTGTAATGACATTATGGCTGTGAATATGACAGTGTAAAATGTATTTCAGGTACAGTCAGGCCTCTTTACAGTACACATAAACTTGAGTTCAAAAAATGTATTACTATTCATTTGACAGAAAATAATCTCTTCATACCCGAAGTCTCAAGGCTTTTGTAAAGTGTATTTAGATTACTTTTGTTTCATTTTGGCACTGGCGTTGTTTGTAAAATGACAGAACATGCAATAAAATTTAAGGGTTAATATCTGCTGTTGATGCCTGTTTATAGTTTCACAACAGTTTTGTAATGATATAGCTGTGAATATGTAAAATGGTATTTCAGATACAGTCAGACCTCTCTACAGTAGACAAACTTAAGTTCAAAGCATGAATTACTGTTCATATGATGGAAAATGTGTAGATCATTTTACAATATGTTTTTTGTGTGCTTAGTTTCCTGGCCTTTGAATATAGTGACTGCTGGAGTTTTGAGTTTGTTTTTATAGAAAGCTACCTGCTTTTCTTAGGTTAATGATGCTGTTCTCATGCTAATTAGGAGGATTTCACATAGGAAAAGCAGTGAAGTTTCTATTAAATCAGTCAACTCCATCCTCACTTTCATTCAAAGGCCGGAAAACTAACCACACAACTGTGAAATGGTCTATTGAGGGAATCTTTTAATACCTGAAATCTCAAGGGATTGGTAAAGTGTAATTAGATTGTTGTTTTTTTGTTCATTTTGGCTCTGGCATTGTTTGTAAAATAACAGAACTTGCAATAAAATTTTAGGGGTTAAGAAATATAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZM5	Abl interactor 1 OS=Rattus norvegicus OX=10116 GN=Abi1 PE=1 SV=3
P62484	Abl interactor 2 OS=Mus musculus OX=10090 GN=Abi2 PE=1 SV=1
Q8CBW3	Abl interactor 1 OS=Mus musculus OX=10090 GN=Abi1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003827 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07815 all species →	Abi_HHR	Abl-interactor HHR	Family	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR028455 all species →	Domain	ABI gene family member 3, SH3 domain	Interproscan
IPR028457 all species →	Family	ABI family	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR012849 all species →	Domain	Abl-interactor, homeo-domain homologous domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10460 all species →	ABL INTERACTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001764 all species →	Biological Process	neuron migration	Interproscan
GO:0017124 all species →	Molecular Function	SH3 domain binding	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0031209 all species →	Cellular Component	SCAR complex	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan
GO:0098858 all species →	Cellular Component	actin-based cell projection	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025763-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.