Gene detail

Detailed information of FUN_025844-T1 in Acropora pulchra

Genomic Location: ptg000020l:1216916...1233493
NR annotation: XP_029190535.2, general transcription and DNA repair factor IIH helicase subunit XPB-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025844-T1

ATGAAAGGCCTAAAACGCAGAAACGATGATTCCTCAAAGTCATCAAAAAAGTCAAAGAAAAGCAAGACAGAGGAAGAGGATGAATATGGTGAAGAGGAATACACAGATGATGTGGAAGTTGCTCCTAAGTCATCGTCTGCTACCGTTGCGGATCAAGCAAATGAAGATGAGTTTGGAGCCAAAGATTATCGCAAGCTGATTGATTTGAAAGCAGACCATTCCTCTAGACCCCTGTGGGTGGCTCCTGACGGCCACATTTTCTTGGAGTCTTTTTCTCCAGTGTATAAACATGCTCATGACTTTCTCATAGCTATTTCAGAGCCTGTTTGTAGACCAGAGCATATCCACGAGTATAGGTTGACAGCTTATTCTCTTTATGCTGCTGTGTCAGTTGGCCTTCAGACAAGTGATATCATTGAATATTTGCGACGCTTAAGCAAGACCACAATTCCTGATGGAATAATCCAATTTATTAAGATTTGCACTCTTAGCTATGGCAAAGTGAAACTTGTCTTGAAACACAACAGATACTTTGTGGAGAGCAACTTTCCAGAGGTTCTACAGCATCTACTGCAAGATTCAGCAATTGAGCATTGCCGCAAAAGAACAGTTGACGACTTTCAGAATGTGTTGAGTGAGAATCAACTGATTAAGTCCTCTGTTGGTGGAAAGGCCTCTCTAAAGCTGAACAAACCACAGCCTGAGTCAAATGGGAATTCTTCCCATGCAAATGAACAGGAACAGTCTTCAGAAGCACCATCTATTCCTACGGATATCACTGATTACATTGAAAAAATAGATCAGGATGAGGATGAAGAAGAGAGTCAAACCTATTCCTTTGAGGTGGCTCAGGAACACATAGAAACTTTACAAAGGAAGTGCATTGAGTTGGATTATCCCCTGCTCGCTGAGTATGATTTCAAGAATGATGCTGTAAATCCTGATCTGAACATTGACTTAAAGCCAACTACAGTTTTGCGGCCTTACCAGGAAAAAAGTCTTCGCAAGATGTTTGGTAATGGTCGTGCAAGATCTGGTGTTATTGTGCTTCCTTGTGGTGCGGGTAAGACTCTGGTTGGTGTGACAGCAGCTTGTACAGTCAGGAAGCGATGCCTGGTGCTTTGTACATCTGGTGTTGCTGTTGAACAATGGAAGAGTCAGTTCAAGATGTGGTCAACAATTGATGATCGTACAATCTGCCGCTTCACGTCAGATGCTAAAGATAAACCCGTCAACTGCAATATTGCTATTTCAACGTATTCTATGGTATCTTTCACTGGAAAACGATCTTGGGAAGCCGGGGAGGTGATGAATTTCATGCAGACGCAGGAATGGGGATTGATGATTTTAGATGAGGTTCATACAATACCAGCTAAACAGTTTAGAAGAGTGTTAACAGTTGTCCAAGCACATTGCAAGTTGGGACTTACAGCGACGCTGGTACGTGAGGATGACAAAATCCAGGACCTTAATTTCCTCATCGGACCCAAACTTTACGAAGCCAATTGGATGGAATTACAAAACAATGGATTTATTGCACGTGTCCAGTGTGCAGAGGTTTGGTGCCCAATGACGCCAGAGTTTTACCGAGAATATCTGAACATCAGAACACGGAAAAGGAAGTTGTTGTATGTCATGAACCCAAATAAGTTCAGATCTTGTGAGTTTTTGATTCGCTACCATGAAAGGCGGAATGACAAAGTCATCGTATTTTCTGACAATGTGTTTGCTCTTAAAAAGTATGCTGAGAAGTTAAAGAAGCCTTTTATCTATGGTCCAACGTCGCAAGGCGAACGAATGCAAATTCTACAGAATTTTCAGCACAACCCACTCGTCAACACAATATTTATCTCCAAGGTTGGAGATAACTCATTTGATCTTCCAGAGGCCAATGTTCTGATTCAGGTTTCTTCGCACGGCGGATCAAGAAGACAGGAAGCTCAGCGACTTGGACGAATTCTGCGAGCGAAGAAAGATATGGCTGCCGAGGAATACAACGCATTCTTTTACACACTTGTCTCAACGGATACTGAAGAAATGTACTATTCAGCGAAACGCCAACGGTTTTTGGTTAATCAAGGCTATAGCTTTAAGGTTATTACAAGACTGGCCGGAATGGAGGAGGAGAACTTAGAACTTGGAGACAAGAGAAAGCAGCAGGAACTTCTTCAGCAGGTTCTTGCTGCCAGCGATGCGGATGCTGAAGAAGAGAGAGTAGCGTCAGATTCTACGAACCGCAGCAGCTCATCGACATCTATCGTGTCCCGTCGCCAAGGTTCGATGGCATCCATGTCTGGAGCAGACGATATGATGTATTTAGAATACAGAAGCAGTAACAAACAATCCAAGAGTCGACATCCTCTCTTCAAGCAATTCAGAAAATAG

Transcript

FUN_025844-T1

GATGAACAAAGTTTATAAGAAATGGTCACAAATGTGATGTGTTTATGGCATATCTAGGGTGAAAATTGTTGTCATGAAAGGCCTAAAACGCAGAAACGATGATTCCTCAAAGTCATCAAAAAAGTCAAAGAAAAGCAAGACAGAGGAAGAGGATGAATATGGTGAAGAGGAATACACAGATGATGTGGAAGTTGCTCCTAAGTCATCGTCTGCTACCGTTGCGGATCAAGCAAATGAAGATGAGTTTGGAGCCAAAGATTATCGCAAGCTGATTGATTTGAAAGCAGACCATTCCTCTAGACCCCTGTGGGTGGCTCCTGACGGCCACATTTTCTTGGAGTCTTTTTCTCCAGTGTATAAACATGCTCATGACTTTCTCATAGCTATTTCAGAGCCTGTTTGTAGACCAGAGCATATCCACGAGTATAGGTTGACAGCTTATTCTCTTTATGCTGCTGTGTCAGTTGGCCTTCAGACAAGTGATATCATTGAATATTTGCGACGCTTAAGCAAGACCACAATTCCTGATGGAATAATCCAATTTATTAAGATTTGCACTCTTAGCTATGGCAAAGTGAAACTTGTCTTGAAACACAACAGATACTTTGTGGAGAGCAACTTTCCAGAGGTTCTACAGCATCTACTGCAAGATTCAGCAATTGAGCATTGCCGCAAAAGAACAGTTGACGACTTTCAGAATGTGTTGAGTGAGAATCAACTGATTAAGTCCTCTGTTGGTGGAAAGGCCTCTCTAAAGCTGAACAAACCACAGCCTGAGTCAAATGGGAATTCTTCCCATGCAAATGAACAGGAACAGTCTTCAGAAGCACCATCTATTCCTACGGATATCACTGATTACATTGAAAAAATAGATCAGGATGAGGATGAAGAAGAGAGTCAAACCTATTCCTTTGAGGTGGCTCAGGAACACATAGAAACTTTACAAAGGAAGTGCATTGAGTTGGATTATCCCCTGCTCGCTGAGTATGATTTCAAGAATGATGCTGTAAATCCTGATCTGAACATTGACTTAAAGCCAACTACAGTTTTGCGGCCTTACCAGGAAAAAAGTCTTCGCAAGATGTTTGGTAATGGTCGTGCAAGATCTGGTGTTATTGTGCTTCCTTGTGGTGCGGGTAAGACTCTGGTTGGTGTGACAGCAGCTTGTACAGTCAGGAAGCGATGCCTGGTGCTTTGTACATCTGGTGTTGCTGTTGAACAATGGAAGAGTCAGTTCAAGATGTGGTCAACAATTGATGATCGTACAATCTGCCGCTTCACGTCAGATGCTAAAGATAAACCCGTCAACTGCAATATTGCTATTTCAACGTATTCTATGGTATCTTTCACTGGAAAACGATCTTGGGAAGCCGGGGAGGTGATGAATTTCATGCAGACGCAGGAATGGGGATTGATGATTTTAGATGAGGTTCATACAATACCAGCTAAACAGTTTAGAAGAGTGTTAACAGTTGTCCAAGCACATTGCAAGTTGGGACTTACAGCGACGCTGGTACGTGAGGATGACAAAATCCAGGACCTTAATTTCCTCATCGGACCCAAACTTTACGAAGCCAATTGGATGGAATTACAAAACAATGGATTTATTGCACGTGTCCAGTGTGCAGAGGTTTGGTGCCCAATGACGCCAGAGTTTTACCGAGAATATCTGAACATCAGAACACGGAAAAGGAAGTTGTTGTATGTCATGAACCCAAATAAGTTCAGATCTTGTGAGTTTTTGATTCGCTACCATGAAAGGCGGAATGACAAAGTCATCGTATTTTCTGACAATGTGTTTGCTCTTAAAAAGTATGCTGAGAAGTTAAAGAAGCCTTTTATCTATGGTCCAACGTCGCAAGGCGAACGAATGCAAATTCTACAGAATTTTCAGCACAACCCACTCGTCAACACAATATTTATCTCCAAGGTTGGAGATAACTCATTTGATCTTCCAGAGGCCAATGTTCTGATTCAGGTTTCTTCGCACGGCGGATCAAGAAGACAGGAAGCTCAGCGACTTGGACGAATTCTGCGAGCGAAGAAAGATATGGCTGCCGAGGAATACAACGCATTCTTTTACACACTTGTCTCAACGGATACTGAAGAAATGTACTATTCAGCGAAACGCCAACGGTTTTTGGTTAATCAAGGCTATAGCTTTAAGGTTATTACAAGACTGGCCGGAATGGAGGAGGAGAACTTAGAACTTGGAGACAAGAGAAAGCAGCAGGAACTTCTTCAGCAGGTTCTTGCTGCCAGCGATGCGGATGCTGAAGAAGAGAGAGTAGCGTCAGATTCTACGAACCGCAGCAGCTCATCGACATCTATCGTGTCCCGTCGCCAAGGTTCGATGGCATCCATGTCTGGAGCAGACGATATGATGTATTTAGAATACAGAAGCAGTAACAAACAATCCAAGAGTCGACATCCTCTCTTCAAGCAATTCAGAAAATAGTGATTTTCTTGGAAGATTTGTGGACCACGTGGCCTGTCCGCTTGCAGTGCTATCGCATAAAAATGAGAATACTTGAGCCCGCAATTCAAAAGAATGAGCGATCTCAAGAAAAGAGAACCGTTTGCTACATTTTACAGACCATATTGAATGAATTTGTAAACTAGAAATGACCGTCATTTGTTCCCTTGTAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RMT1	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Bos taurus OX=9913 GN=ERCC3 PE=2 SV=1
Q60HG1	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Macaca fascicularis OX=9541 GN=ERCC3 PE=2 SV=1
P19447	General transcription and DNA repair factor IIH helicase/translocase subunit XPB OS=Homo sapiens OX=9606 GN=ERCC3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF16203 all species →	ERCC3_RAD25_C	ERCC3/RAD25/XPB C-terminal helicase	Domain	Interproscan
PF13625 all species →	Helicase_C_3	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001161 all species →	Family	Helicase XPB/Ssl2	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050615 all species →	Family	ATP-dependent DNA Helicase	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR032438 all species →	Domain	ERCC3/RAD25/XPB helicase, C-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032830 all species →	Domain	Helicase XPB/Ssl2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11274 all species →	RAD25/XP-B DNA REPAIR HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0000112 all species →	Cellular Component	nucleotide-excision repair factor 3 complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10843	ERCC3, XPB; DNA excision repair protein ERCC-3	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.