Gene detail

Detailed information of FUN_025889-T1 in Acropora pulchra

Genomic Location: ptg000020l:1656782...1665066
NR annotation: XP_044177552.1, testis-expressed protein 10 homolog [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025889-T1

ATGCCAAAAAGCCGAAGAAAGAAAAAACTCAAGGAAAAGGATTTCCAGAAAGTGAAATTTAAAGTTGGAAAAAAGATACAACCTGCACAGAATGCGACGGACACGTCATTCAAATCCAGGGCAATTTTTATCCCTTCGCAGTTGAGTCAAACCACGGAGCCAACTAATCAAAGAAACCAGAATTTAAAGGATTTACTCGCACAAGTTAGTCATTACAGTGCAACATCAAGACAAGATGCCTTGGTTGGCCTGAAAGATCTCTTCCATTGCCATGAGAATCTGCTTCATGAAAATCTTGGTATTGTTATCAAAAAGGTGGCAGAGAAAATGACAGACAATGAACCCTCTGTCAGACAATCACTTCTTCTACTCCTTTGCTCCATTTTCCCAATGGTTCCACAGGAAAAGATGGCTCCATTCTCACCACTGATCATAGCTCATTTGAGTTGTGCCATGACACATATTTATGATGACATTCAACATGATTCGTTGGGTTTTTTAGAATTGTGTCTTCAGTGCTTTCCTAGTTTAATGGTGACAAGCTCATCTCAACTGATCAACAACTTCATTGGTATGATTTCACATCAGGATACTTTACGACCACAAAGGTTCAAGGGTTTACAAGGTTTATCTAGAACAATACTTTCTGTAAATCCCAAAGGAAAGCTTTCTTCTCTGAGGTCACGTCTGAAAGTACTGCAGCAGTTGCATGCATTTTTGAAAGCCATGGAGTCCTTGTCAAACAGTGGCAGCAGTGAAATGACTTTTTCTTCAACGAGCAACGGTGATGTATCATCGGCAAAGCCAGTCTTTAAATTCAGTAAGCTTCAACCAACTCAGGTTCAAGTATTGCAACATTCAGTCAATGAACCAAAGTTATCACATGTTTCCTTTGGTAACACCTCATTTTCATCATCATCTCTGAAAGTGGAAATTGAATTGAACATATTGACTGATGAAAAACAGACCAAAAATCTCATGGAGACCATTGTGCCGTTGTTGCTGGAATGCTGGGTTGAATGCAACCCAACGCAAATGACAAGTCTGCCAGACAATGTTGTGTCTTCATCTGCCATTGATGTAATGCTTGCCATAGCAGAAACTCTGAAAATCATCTTTGCTGCAGCCCAGAGAAATCAAAAGAATTTCACTTGCAACACAGAAAGCTCTACAGTAAAATCTTTGCAAGAGATTTATGTAAAAGATCTTAGCACACATATAATGGCCTTCTTTCCATTTAGACTAAATCATGCTCAGGCAGTTAACAAACGAAAAAGAAAATCCGGGAATGCTTTGCGGAAAGCTGAAAGTGAGAACAGTAATGCCTTAGCATTGGTTTTGAACCTCACTGTCTGTGAAATTATGCTGCAATTTTTAGGGACAGACATGACATTGCAGAGCAATTTCCAAAGTTCATCTGAGTTATTAAAAGAGTTTGTGTTGGATCATTTGGAGATAAAAGCTAAAGGAGGAGTAAAGAGTCAGATAATACAAGCAGATCATGTGGAGAAACTTGTGGTGTTTGCATACAAGATCATAGTTCAATATTGCTTGTTTGCACCTCAAGCCCCTGACCAGGTAAACGAGCTCCTGGAAGCTGCATTTCTCCTGTACCAGTCAAGCCATGCTGTCTGTGGGACCAAGAAGGTGCTGATGTCATTTTTTGCCAGCCTTGCTTTCCATGAGAATTCTGCTGTCTCCAGGCATGAAGAGGTGCAAAGAGTAGTCCACAAATGGTTGCAAGGCCTGCCTCGTTTGTTGCTGCAATTGAAAGATGACAGTCCAGCTCTGACTGAACTTGTCCTTGGCATTTTGAAGAAAGCTCTGATGCAAAGTTTCTTGAAAGCAGATAGAGAGGTGTCTTCAAGTCTGTGGGTGTTTTTCTCTAAAGATAAAGGCCCATTTCGTGGACTGAGTCAATCTGTGCAGAGGTTGGCAATTGAGTTGCTGTTTCACCTTGCATCAATTGACACTAAATTGTTGCAAGTTCTTGTTTCCTGTTGTCAAGATGATGCTGGTGTGAATATATCAATGATCGAGTACATTGTTCAAGTCTTGTATTACAGGTCACCTTGCTACCAAGGGCATTTGTCTTATCCAGTTGCCTTTTCGTTGCCATTGTTTCTTGGTGCTCTTTTCAGCATAGCAATAGGGTTCTCCCAACACAAGCTACAAAAGTTTCAAAAGACAACAAACCAGGAAAAAACTTTTAAGTTCGTAGAACTCAAGGGCTGCAGTTATGTCATTCTGGAGGAAAAAGCACAGGCTGAAGCAAAGGATGTCGCATCATCGTCGAACCAGAAAAGCCCTGCACACAAAACATGGGATAATCATCAAATCAAACTACAGGCAGTATGTCAGTGCTTCAAGCAAAGTCGACAGTCCAGTGACCTGTTCAAGTTTATGATCTCAGCATTTGAAACATTTTTGAAAGAGTTTAAAGTTCTGCCTGTTGCTGCGGCACACAGCTTCTTGTCCATTCTAAAATGCTTGGTAGAATTGTCCGCGGACTCGGAAAGTCAAAAATTACCTTCCCAGTCGCTGTCTAACCTTGCCCAGCTCTCGCTGGTTTGTTTAAAACACTCCACCGTGTTTGAAGCTTATTCTGGAGATTTCAGCAGTGGTGCCGTGGAAATGGAAACACACCTCTTTGAAGCAGTTGTTGAGTTTCTGTTCGCCTGGAAAGCAGTCGCAAATGGCGTATTATCTCTCCTTCTGCGCGTTCTTTCAGACGACTCAGAAGAGCTATTGAGACAAGACTTTGCCGTCATACTCACTAAATTGCTTTGCTCTAAAGCAAGAAAAGTTTTCCTTCAGTGGCCAGATATTGTAAAGCTTATTGTATCTCGTATTTTGCTCACAGGGGATTCAGAAGCACCTCTCAAGCAATGCTTTGCTGATCTCAAGTACCAGTTTTCTTTGTTCCAAATTGATTGCGGTTCAAATGGATGA

Transcript

FUN_025889-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZM41	Testis-expressed protein 10 homolog OS=Gallus gallus OX=9031 GN=TEX10 PE=2 SV=1
Q803M3	Testis-expressed protein 10 homolog OS=Danio rerio OX=7955 GN=tex10 PE=2 SV=2
P0CT45	Pre-rRNA-processing protein IPI1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=IPI1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004262 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12333 all species →	Ipi1_N	Rix1 complex component involved in 60S ribosome maturation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024679 all species →	Domain	Pre-rRNA-processing protein Ipi1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16056 all species →	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0071339 all species →	Cellular Component	MLL1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14827	IPI1, TEX10; pre-rRNA-processing protein IPI1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.