Gene detail

Detailed information of FUN_025906-T1 in Acropora pulchra

Genomic Location: ptg000020l:1773346...1782782
NR annotation: XP_015774340.1, PREDICTED: nucleotide-binding oligomerization domain-containing protein 1-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025906-T1

ATGGACTGCACGGCAATCAAGGAAGCGATCAGTCCCAAAACTTTAAACAAGTTTACATTTGCACTGGTCATAGTTTGGATCGTAGTCGGTGCCACACTGTGTATAGCTTTCGCAGAGCTGGAAATCAGTGAATCCAGGTACGATATTCAATGTGTGACAGGGAACAACCCGGACAGCAACTTCATCCATGGAAAGTGCTATGATGAATACCGGATGCAAAATCATAAACTTGGCATTCCCCCTTACCTCTTTGTCATAGTAAACGTGCTCCTGCTTCCAATTGTGACAGTCATCTACTCTCAATACGCCAAGTCAACTGTTAATGAACTCGAAAGTAACCCTCAAGACGCCCAAAGACGACCCAGGAATCGAAGACGAACCCTTTTCAGGGCATACCTTTGTCAACTCATTGTTAGCATTGTTTTGGAAATAACGTTCATCGTCTTGCTGGAAACGCATCTATTTTATCCTAGAAACTTTCCGTCTGACTTTTCTTGTTCTATCGAAAATCCGTCCTTTAACCGAACGCAATTCAACTGTTACAATAAACGAGCGGGTTATAAAAATGTCTGGACCAAAGTTGTGATAGCAGCGAATGGAATTTTCGCATTGTTTGCTTTCCTGGAGATCATTTGGATCTTATCGCGAGGTAGACATGGAAAAGAATTCATGGAAAATTGGCGGTTTTATGCGGATCATTTAAAATCAAACTCAAACGAACAGCGCCAAGGACGACCAGACGGAATTCCTTTAATGGAATCACAAGTCCAAAATGATTTCCACATTGCCATAGAGACCCTGAAAAAGAATTGCTTGCAGGACACTGATAAACTAAGTGATCTTAAACAACCTTTTGGCAGACCAAATCCCGGCGAAGGCCACATACATGATCTCACAATAGACAAGATATATGTCGATGTAAGCATGGTTGAAGGCAGAGCTTACCATAAATTTACAGAAGACAGGTGGGAACAACTTAAAAAATACCCGCCCCATGCTGACGACTGTCTCTTCAAAAAACCATGGGATCTTCTTGACCGGGATCACAAGAATGTTCTCGTTGTAGGCCGTCCTGGGATAGGAAAGACATCATTCAGCACAAAGTTCTTTCGCCTTTGGGCATCTGGTGAGGCTTTTAATGGAGATGAACATTTCAACGTTGTCTTCCTCGTAAAGTTTAGGCGTTTTAATAACTACAACGTAAACTTGAGCCTTCTTGATCTGATGGCTCGCTCAGAAACAGTCCAGAGTTTGGATGATGCTGTTTGGGATTTTATAAAACAAGAACCTACCAAGGTTCTGTTAATTTTTGACGGATTGGATGAATATTCAAGAAAAGAGGATATCAAGGCCCAAGATGATGACCCAACTTACAAAAACTGTGTGGAAGAAAAGATGCCCGTTTACGTTTTGTATAATAAACTGGCGGAGGGAAAACTTCTTCCTGGTGCAAGCATACTCACGACAACACGACCAACTGCTGTGAAATGTGTTCGTCATCTACCTTTTCAAAGAACAGTCGAAATTCGCGGATTTACTTCGGATGACGTTAAAAAATATGTAGAGAATTTTACTCAAGATTACCCCGACGCAATGGAGAAAATGTGGGAACACATCAAGTCCAACATTAACCTGTTTTCATTTTGCTACATCCCAATGAACTGCTTTCTCATTTGCCATTGCTTGCTTCAAATCATCCTTTCTGAGTTTTCCCAAGCACTGCCAACGAAGATGACGGATATTTATAAAATGACCGTAAAGATGTTTTTGTTCAATCACAACAGGGAAGGTTTCTCTCCGGAGGAACTCGCAAGGCTCAAGTCAACCTACATGGATGAGCCTTTTGACAAGTTGCCTGAAGAACTTCAAAAAATCTTCAAAAGTCTTGGAGAAATCGCTTTTAAAGGGATTGAAGAAGGAAGACTCCTCTTTGAATCAAACGAAGTCAGTGGTTTAGAAGATTGCGGACTGCTTCACAAATTGCCAGACCAAAAACGGAGAGCATTGGATGCCCCGTCAAAGTCGCAATTCTGTTTTACTCACCTGACGAGATATGTCCAGAAATGCACGCAACAACAAAAATGGCAAAAAAGAGAACATAATGGCGAATTTGGCAAATATGGCAAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATTAGGGGGCCCATAAAAGTTGGCGATACTGGCAAATTTGGCAAATATGGCAAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATAAGGGGGCCCATAAAAGTTGGCGATACTGGCGAATTTGGCAAATATGGCGAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATGAGGGGGCCCCATAAAATGCACCTGACAGTGCAAGAATTCTTTGCCGCAAAGCATCTGGTGGACAGCAAGACAGATGAGGAAATTGAAAGATTTGTTTGCGAGCATATCTATGGCGGCACATGGCAAGTGGTACTGCAGTTCGCAGCCGGATTGCTGAAGAGCTCACTAAGTACCGACATTTTCATCAAGCTGTTGCCGGAGTCGACTGAGAAGAGAAAAAACCGTGAGTCTTCAGAACCAAAAACACTGACCTACTGGCCAGCGACAAGAGAAGACAAACATCTAGTTGTACAAGTATGTAAGTGTCTGTACGAGATTGACGATGAACAGCAGACAGTATTACAAAACAAAATAGAGAAAATTAAATTCAACGCGGTTCACTTAAATAATTGTTCACTCGCACCGATTGATGTTGCTGCTGTCTTACATTCCTTAAAAAATGCTGAAGAAGTTTTGAACATTAATTTACACATCAATGCGTTGGGAGACTTAGGCGCAAACGAAGTGAAACAAATTGTTGTTAACAAGGAACGCAAACTAGAATCGTTAAAACTCGGTTATAACAACTTGTCCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGAATCGTTAGACCTCAGTTTTAACGACTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAAACGTTAGACCTCAGTTTCAACGACTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATTGTTAGACCTCAGAGGTAACATGTTCACCGACAACGGAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGAGTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGACCTCAGTCAGAACAAGTTCACCGGCAACGCTGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAATCGTTATCCCTCAGTGCTAACCAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTGGTAACAACTTCACGGACAACGTAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGATTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGACCTCAGTCAGAACAAGTTCACCGGCAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAATCGTTATCCCTCAGTGCTAACCAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTGGTAACAACTTCACGGACAACGTAGCGAAGGATTTCGCTGCAGCACTTAAGCACTATAATTGTAAACTAGAATCCTTATACCTGAGTTTTAACAACTTCACAGAGGGGGGACGCAAGTATTTAACCGACGCGCGAAAGCAAAGAAATTGCAAACTTGTTGTATGA

Transcript

FUN_025906-T1

TCCATTGTTTCTCAGTACGGAAAATGCTGCCAAATTATGCAAGCTCTGAAATACCACTCTCCAGCACTTGAAAAATTTTATGACCATCTAGTTACGAGAAACTCCACTGCTCTAAGCGAACAAATATAAGTACATTGAATTTTATTGTGATTGTTGCGTCCTGCCACTGCATTGATTTTTTTTTTATTGTTTAGTTTGTAAAAAATATGCTTCATCCTACAGCTTAGATGAGCTCAAACAAAGATCTAAAGCTTAAAGCAAAATTGTCAAACTCTCTCAAACTTTAAAAGCGCCACTGACGTGTCTCTTGGCAGGCTATTTTTTTTTTTGAGGATATGACAATATTTTTGCAGTCTCATGAGATCTCAAGTATGACTTTTGGTTTTTTTTTTTGTAACTGGTGTATATACCACAAGTGTTACTAAAAAAATTCTTTCGCCCGCCAGTTTACGGCCAATAAGGTTTCAGAAATTTCTCAGGGAGCACTAGTAGTAACAAAATGCTTTTAGAACAAATATTTTGTCCTATAGCCAGAGGATGAATAACGACACCATCCTTGATTTAGAAGGGCTAGAAAGAGAAGCCTTCTTCTCGAGACGATGAAGCAAAATGCCTATTCAAATGTCATTGTTTCAAGCCAATTCATGGCTTGTAGGCGTAAGAAATTTTTTACCCCCCGCTTCAAGTAAACGCAAATGTTTTTTAGCCGCAGGGTCGGTGAAGTCAAATGTATAAACAGAATAACCATCAACAGGTAATCAAGCGTCACTCTGATATCTAAATTTTAAGTCGACTATCAGGCGCAAAGGATTAACATTGCGTCTTTGAAAAAAAGGAGTTCAGTAGAAATTGTTGTGTATACCGTCGTTGTGTTCTTGCTCCCTTCAAGAATTTGATCCTTAGGAATGTGTTCCAGCAAATGATTGTGCCATAAATAGCGACAAGGGGGAGGGGCTTCTTTTCTAAACGTACACGAGAAGCTAGTTGAACCTCTTTTATTAAAGCCATTCCCATAATTTCTGTGTCAAAATCATGATTTTGTAATGTTTCTCTCATTTAAATCTATGTCCGCATGACAACTTGGAAATTTGCGTGTGAATTTCTTTCGACGAGGCTAAGGTCAGTACCGGTCAATGAAAATTATGAATGAAAGGATCCAGTGTTGTGACAAACATGCCTTATATAGAAAGTAATTTTACTGGCATGAACCACTTTGCGGGTTGTCAATCTCGGCCTACAAGAGGACGCCAGTTCTAATATTTTTGCCATAACGAGATCAGAAGCGACGAGGAAGGATCAAATACAACATGGACTGCACGGCAATCAAGGAAGCGATCAGTCCCAAAACTTTAAACAAGTTTACATTTGCACTGGTCATAGTTTGGATCGTAGTCGGTGCCACACTGTGTATAGCTTTCGCAGAGCTGGAAATCAGTGAATCCAGGTACGATATTCAATGTGTGACAGGGAACAACCCGGACAGCAACTTCATCCATGGAAAGTGCTATGATGAATACCGGATGCAAAATCATAAACTTGGCATTCCCCCTTACCTCTTTGTCATAGTAAACGTGCTCCTGCTTCCAATTGTGACAGTCATCTACTCTCAATACGCCAAGTCAACTGTTAATGAACTCGAAAGTAACCCTCAAGACGCCCAAAGACGACCCAGGAATCGAAGACGAACCCTTTTCAGGGCATACCTTTGTCAACTCATTGTTAGCATTGTTTTGGAAATAACGTTCATCGTCTTGCTGGAAACGCATCTATTTTATCCTAGAAACTTTCCGTCTGACTTTTCTTGTTCTATCGAAAATCCGTCCTTTAACCGAACGCAATTCAACTGTTACAATAAACGAGCGGGTTATAAAAATGTCTGGACCAAAGTTGTGATAGCAGCGAATGGAATTTTCGCATTGTTTGCTTTCCTGGAGATCATTTGGATCTTATCGCGAGGTAGACATGGAAAAGAATTCATGGAAAATTGGCGGTTTTATGCGGATCATTTAAAATCAAACTCAAACGAACAGCGCCAAGGACGACCAGACGGAATTCCTTTAATGGAATCACAAGTCCAAAATGATTTCCACATTGCCATAGAGACCCTGAAAAAGAATTGCTTGCAGGACACTGATAAACTAAGTGATCTTAAACAACCTTTTGGCAGACCAAATCCCGGCGAAGGCCACATACATGATCTCACAATAGACAAGATATATGTCGATGTAAGCATGGTTGAAGGCAGAGCTTACCATAAATTTACAGAAGACAGGTGGGAACAACTTAAAAAATACCCGCCCCATGCTGACGACTGTCTCTTCAAAAAACCATGGGATCTTCTTGACCGGGATCACAAGAATGTTCTCGTTGTAGGCCGTCCTGGGATAGGAAAGACATCATTCAGCACAAAGTTCTTTCGCCTTTGGGCATCTGGTGAGGCTTTTAATGGAGATGAACATTTCAACGTTGTCTTCCTCGTAAAGTTTAGGCGTTTTAATAACTACAACGTAAACTTGAGCCTTCTTGATCTGATGGCTCGCTCAGAAACAGTCCAGAGTTTGGATGATGCTGTTTGGGATTTTATAAAACAAGAACCTACCAAGGTTCTGTTAATTTTTGACGGATTGGATGAATATTCAAGAAAAGAGGATATCAAGGCCCAAGATGATGACCCAACTTACAAAAACTGTGTGGAAGAAAAGATGCCCGTTTACGTTTTGTATAATAAACTGGCGGAGGGAAAACTTCTTCCTGGTGCAAGCATACTCACGACAACACGACCAACTGCTGTGAAATGTGTTCGTCATCTACCTTTTCAAAGAACAGTCGAAATTCGCGGATTTACTTCGGATGACGTTAAAAAATATGTAGAGAATTTTACTCAAGATTACCCCGACGCAATGGAGAAAATGTGGGAACACATCAAGTCCAACATTAACCTGTTTTCATTTTGCTACATCCCAATGAACTGCTTTCTCATTTGCCATTGCTTGCTTCAAATCATCCTTTCTGAGTTTTCCCAAGCACTGCCAACGAAGATGACGGATATTTATAAAATGACCGTAAAGATGTTTTTGTTCAATCACAACAGGGAAGGTTTCTCTCCGGAGGAACTCGCAAGGCTCAAGTCAACCTACATGGATGAGCCTTTTGACAAGTTGCCTGAAGAACTTCAAAAAATCTTCAAAAGTCTTGGAGAAATCGCTTTTAAAGGGATTGAAGAAGGAAGACTCCTCTTTGAATCAAACGAAGTCAGTGGTTTAGAAGATTGCGGACTGCTTCACAAATTGCCAGACCAAAAACGGAGAGCATTGGATGCCCCGTCAAAGTCGCAATTCTGTTTTACTCACCTGACGAGATATGTCCAGAAATGCACGCAACAACAAAAATGGCAAAAAAGAGAACATAATGGCGAATTTGGCAAATATGGCAAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATTAGGGGGCCCATAAAAGTTGGCGATACTGGCAAATTTGGCAAATATGGCAAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATAAGGGGGCCCATAAAAGTTGGCGATACTGGCGAATTTGGCAAATATGGCGAAAATGACAATTTTGCCAGAATCGCCAACATGGCAAAGCACAAAGCAATGAGGGGGCCCCATAAAATGCACCTGACAGTGCAAGAATTCTTTGCCGCAAAGCATCTGGTGGACAGCAAGACAGATGAGGAAATTGAAAGATTTGTTTGCGAGCATATCTATGGCGGCACATGGCAAGTGGTACTGCAGTTCGCAGCCGGATTGCTGAAGAGCTCACTAAGTACCGACATTTTCATCAAGCTGTTGCCGGAGTCGACTGAGAAGAGAAAAAACCGTGAGTCTTCAGAACCAAAAACACTGACCTACTGGCCAGCGACAAGAGAAGACAAACATCTAGTTGTACAAGTATGTAAGTGTCTGTACGAGATTGACGATGAACAGCAGACAGTATTACAAAACAAAATAGAGAAAATTAAATTCAACGCGGTTCACTTAAATAATTGTTCACTCGCACCGATTGATGTTGCTGCTGTCTTACATTCCTTAAAAAATGCTGAAGAAGTTTTGAACATTAATTTACACATCAATGCGTTGGGAGACTTAGGCGCAAACGAAGTGAAACAAATTGTTGTTAACAAGGAACGCAAACTAGAATCGTTAAAACTCGGTTATAACAACTTGTCCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGAATCGTTAGACCTCAGTTTTAACGACTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAAACGTTAGACCTCAGTTTCAACGACTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATTGTTAGACCTCAGAGGTAACATGTTCACCGACAACGGAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGAGTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGACCTCAGTCAGAACAAGTTCACCGGCAACGCTGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAATCGTTATCCCTCAGTGCTAACCAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTGGTAACAACTTCACGGACAACGTAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAGATTCGTTAGTCCTCTGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTTGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAATTCGTTAGACCTCAGTCAGAACAAGTTCACCGGCAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTTATAACAAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTAAGCACAGTAATTGTAAACTAGAATCGTTATCCCTCAGTGCTAACCAGTTCACCGACAACGCAGCGAAGGATTTCGCTGCAGCACTTGAGCACAGTAATTGTAAACTAAAATCGTTAGACCTCAGTGGTAACAACTTCACGGACAACGTAGCGAAGGATTTCGCTGCAGCACTTAAGCACTATAATTGTAAACTAGAATCCTTATACCTGAGTTTTAACAACTTCACAGAGGGGGGACGCAAGTATTTAACCGACGCGCGAAAGCAAAGAAATTGCAAACTTGTTGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K3Z0	Nucleotide-binding oligomerization domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nod2 PE=1 SV=1
A6QLE5	NACHT, LRR and PYD domains-containing protein 3 OS=Bos taurus OX=9913 GN=NLRP3 PE=2 SV=1
G1T469	Nucleotide-binding oligomerization domain-containing protein 2 OS=Oryctolagus cuniculus OX=9986 GN=NOD2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00029 all species →	Connexin	Connexin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR013092 all species →	Domain	Connexin, N-terminal	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR038359 all species →	Homologous_superfamily	Connexin, N-terminal domain superfamily	Interproscan
IPR051261 all species →	Family	NOD-like receptor (NLR)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24106 all species →	NACHT, LRR AND CARD DOMAINS-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22614	NLRC3, NOD3; NLR family CARD domain-containing protein 3	-	Pattern recognition receptors	ko04054	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.