Gene detail

Detailed information of FUN_025918-T1 in Colpophyllia natans

Genomic Location: contig_55:2248071...2251162
NR annotation: XP_020609527.1, pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_025918-T1

TGTTAATCAACATGGCGGCTGAACCCAAGCAAGTGTGCTAATTTTACTGTTGCTGTCTGTGACCTCATAATCAGCCATAATGGATTAATTTTAAGTCCTTTGCTTTATGCAACGAGAGAATTCTAAAAAGTGGATCGTGTGCTTGTGGAGAAAGGCGCGATCTATGTTTTCAAAAGCGAGGAAGCCGTTCGATATAATTCTCATTAGAGACATTACGTGTTAAATATTGGGGGTAAAATTGGCTTTGTTCTCACGATCGTCCAGTCATTCTAATGGCAAACTGGTTTAAGTCATTGCTACAGACTACAGGACGTGGCTAAGATGCTAACCGTAAAGATGATCCGATCATCGCGCGCTGGAATCTCAAAAGTACAACAGTGTATAAAGAAGTCATCACTTCTGCAACGTGGTAAGTTGTCAAACTTCAAGGGGTCATTTTTCAGACGTAGTTATACCGAAGgaataaagaaaacattgtatGGTTTTAATTGGAATAGTGGAATTACAACCCTTTTTGGTCATCGTGGATTGTCAAATCTCGGCAAATTGGCGGTGTTACAGACATTGTCGTCGACGAGAGCTCGCGCCCGATCGAGCTTATTCGGAATAAACATCCGAAGCGTCTACAAAGAACCATGGATGATGTCAGATGAAGAAGTTTTTGACATAATTACGAAAAATGAATATGAAGAGAAGCTTCAGGGCGGAATTGTGAGCAGATTTGAGTCCAATCTGTTACCCTCTAACGAGCCAACTGAGGACCGAAGGTTCGCTACAAGATTACTGCACGACAGGGAAGCACTGTTATTTGGAGTGTTGGATGGTCATGGAGGAAACAGCTGTGCTCATAATGTGTCTCAGCGCCTCTCAGACTATATAGGACTAGCAGTACTTCCAAATGAAATTCTCTTAGGATCAACTTTAAAGAACTACATTTGTGCCAAGCACCTTCTTGTTTCTAATACTCCTGATAACTACAATTACCGTGAGGATCCTGTCTGCAAGGAAAATCTTAGGCAGTACTTTATGGAGCTGTATAGGGTACAAAAGAGACATCAAGTTAGTGATTCTGTTGCTCCTACACTTGCGCATCTTCAGGAGACTCATAGCCACCAAATGGCTTCTGTAGAGGCAAAGGAAGAACAGGTTTTTCATACTAAGATGGCCCTGTCAAAAGCTTTTCGTAGACTAGATGACAATTTAAGTCACGAAGCATTATCCCAAGGCAATAACCAAGAAGCTAATGAACATAAATTTAAGTCAGCTGTGTCAGGGGCATGTGCATTGGTTGCATACATAAAGGGCACAGAGCTCACTGTGGCAAACTGTGGAGACTGCCGTGCTGTGCTTGGTGTGCAGAGTGAGGATGGGCAGTGGTCGGCACAACAGTTATCTACTGACCATACAGCTGCTAACCCCAGTGAAGTCCAGCGTGTACTGAGTGAGCATCCAGTTGAAGAGGCATCTACTTGCCTTAAACATGGAAGACTTCTTGGCCGGCTTGCTCCATTAAGAGCATTTGGCGATGCTAAATTCAAATGGAGCAAGAAGAAACAAGATAAAGTGTTTCATGAAAGGGGCTTAAAATCACTCTCTGATGCTAAAGAATTTCTTACTCCACCCTACCTCACTGCTGAACCAGAAGTGACCTCATACCAGCTGCAGCGCTCTGACAAATTTCTGATTCTCGCCACTGATGGTTTATGGGATATGCTCAGCAATGAGGAAGCGGTTGATTGTGTTAGGGACAATTTACAGAGACATAATCCAGGCAACAGTAGTATCACTGATCAGAAACAGAAATCTGCTTGCAATGTGGAGAACTCTGCTTCCTGTCTCATAAAGGCAGCTTTAGGTGGTGAGGATCATGTGTCTGTCAGTACAAGCTTAAGTATTCCTTATCCCGATGTGCGCATGCGCCGTGATGACATTACAGTTACTGTAGTGCACTTTGATTGGAGCAATGTGGCAATGGAGTAAGCCAATATTAGGGTCTGTTACCTATGTGTATGTGTATAGCAAAGAGAATTACAGGTGCTAGTTTCCTTGTATTTACAACTGTATCTATGCATGCAACAAGAAAATTCCACACAATTCTGatcttaaagtgtatatgacatgaacatttttttctgcttaattcaaagacctttcgaaatacagaagaatggcatttttctttttgaaatatcttttctcgtttcagagatattgacattgtctattatgcaaattagttcagtaatgacgtcatttggtgtgcaactaaaaaatggtaaaatactgaataaacaatatctctggaaatattaaagcagtgtttttgaaacctggcaccacaaatgtgcatcagaaaaggaacaaaatgacacccttactTTTATTGCCC

Protein

Uniprot

Uniprot term	Description
P35816	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Bos taurus OX=9913 GN=PDP1 PE=1 SV=1
Q3UV70	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Mus musculus OX=10090 GN=Pdp1 PE=1 SV=1
O88483	[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Pdp1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00481	PP2C	Protein phosphatase 2C	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001932	Domain	PPM-type phosphatase-like domain	Interproscan
IPR036457	Homologous_superfamily	PPM-type phosphatase-like domain superfamily	Interproscan
IPR015655	Family	Protein phosphatase 2C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13832	PROTEIN PHOSPHATASE 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004722	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0004741	Molecular Function	[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01102	PDP; pyruvate dehydrogenase phosphatase	EC:3.1.3.43	Protein phosphatases and associated proteins	ko01009	deepkoala