Gene detail

Detailed information of FUN_025923-T1 in Acropora pulchra

Genomic Location: ptg000020l:2023013...2055530
NR annotation: XP_044177526.1, CLIP-associating protein 1-B-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_025923-T1

ATGAAAGACTTAGCTTTCTTAGAGGGTATTTTAGCCGCTGTCAGTACACAGGACACTCAGAAAAGACTAAAGGCAGCCGAAGATCTCTCCAACTATCTGAGTGAGCCCTCCAACGGAATCGAATTTATTGGCTTTGACAAACTTCTCGACGGACTTGTTGGATGGGTCAACAGCAGTAATTTTAGGTTGAGCCTTACTGGATTGGACCTCCTTCATAAAATTGTTGACAAGGTCGGAGCGAGTTTTCGGAGTCATCTTTTGCCAGTTGTGCCAGCAATTATTGATAGATTAGGGGACAGTAAACAGCAGGTTCGTGATTCTTCTCAAGATTTGCTTCAGAAGTTTATGATTGTCTCAAGTCCTCAGCATGTTCTGGAACAGTTAATTCCTGCGTTTGCTCACAAGGCTTGGAGAGTAAGAGAAGAAGTACTTCACTGTCTTGTTACTTCACTTAACGAGTTTGGGCAATCATCATTGACTATCTCAAAATTTGTACCACATATTTGCAAACTTTTAGCAGACCCAAACAGCCAGGTGCGAGATAGTGCCATCAGTGCTCTTGTGGAGATTTATCGACATGTTGGCGAAAAAGTAAGAGTTGACCTCAGTAAGAAGGGTATACCATCATCAAGGTTGTCAATCATCTATGCAAAATTTGATGAGGTAGCCAGGTCAGGGAAGATGATGGTGAACGAACCCAATGGACCCTCAAGAGTTAACGGGGAATCAGAGACAGATGGAGCGAAGCTGTCCACGATGGGACCTTCCAGAGTTGGGTCAACGAAAAAGACTTTGCCGTCGAGAAAGACCAGTGGATCAAAAACCCCGGCCTCGTCATCTAGTTCAGCATCGGCAGGTGCTGTAGATGAAGCGGACTTTGAAAACGCATTTTTCGATTGCCCAGATGTAAAGGTTTTCAACGCTAGGGATCTGGCAGAAGAAATGTCAAAGATACAATCGGTTTTATCAGACGATAAGAACGACTGGGAGCATAGAGTTGCAGCGCTCAAGAAAATCCGCAGTCTTGTTCAGGCTGGTGCGATGGAATTCGACAATTTTCTGTCGCTACTGCGGCTGCAAGAAGGCGCCTTCAAACTTTCGACTAAAGACTTGCGCTCAACTGTCACGCGAGAAGCATGCGTGACGCTGAGCTATCTGTCAACAATTTTAAAGAGCAAATTCGATCATACGGCAGAGGCAGTCCTACCCACTCTGATCAACTTGATTCCCAACAGTGCAAAGATTATGGCTACCTCTGGTCACGCATGTATCTGTTTTATTCTGAAGGGAAGTAACACGCATGCTCATCGTCTTGTACCCATCTTTAGCAATAACATGACATCCAAATCAAGCATAATTCGACGGCGCTGCAGCGAATACATCGATTTACTTCTTGTTCACTGGGACACTTCCACAATTAAACCTCGTATCAGCGAAATAGAAGAAGCGATTCGTAAAGGGATTTCTGACGCAGATGTAGAAGCCAGGGCTACCATGCGAAGGGCGTTCTGGCATTATCACGATCATTTCAGAGACAAAGCTGAAAACTTGTTGAAGTCGTTCGATCCCTCGAAGCAGAAACAACTTGAAAACGACCGTAACCTTCCCAACCTTGGCCCAGCGAAACCTTCGTCGTCTGGCCGATATGCCACTGTTAAACCCACGAAATCCACGAGTGGAAATCGAATACGCTCGGCAAGTGCAACCAGCGAAGACGGTGCAGCAAGTTCCCGAGCACCTTCCCGTCAAACATCTGGAATGTCGAGCCGCGCGATCAGAACCAGTCATAGAGAAGATACCCGCCATGTTGTGGCTTCTAAGACATCAGGATCACATCTCTCACCAATGGCTGCTATGGGTCGCTCCCTCAGTAACATCGACCAGCGGTCTGCGGAAAGAGCCACCACTCGATCCAAACTCCGGTCGGGAGCTTCTCGCGTATTATCTCCACCAAACCACCATATGCCACAACAACGGCAATCTCGAGCACAGTACCCCTCTAGGGGGACGGTGTCGCAACCTTCTAGTCGTTCCCAATCTCCGGATCGACTCCTCGCGACTTTTCCTCCTAGAGAGAGGTCTGAGGCCTACTGTCGAAGAGAAAGTTTAACTGGAAGAACAAAAATTCCGACGCCCAGTGTCTCTCGGCATCCAAGCGACGAGGCTCTGGATAACCCTGGGTACCAGTCACCTTATTCCCCTTTCACATATTCTCCCTCTTCCCTTCCCGTTCGTACGCCCCTTGTGTCTATGCATCTCATCCATGATGCTTTTAAAAGTCCTGAGTACAAGTCGCACCAGTCTCCACTTTCTTTCTCTTCTTTTCTCGCTCCTCCAAAGCCTCCTCGAGGGCGAACTGCCTCTCAATCCAGCTCTCGCGCAAGCTCGCGTGGAGCGAGTCGAGACACGAGTCCTGAGCGAAGGCGACTGAGTGTTGAAAGAGGATACAGTCCGAGTCACTTGCCAGTATTGAAGAAAGCAAGCCCGTTACACAGTGAGTAA

Transcript

FUN_025923-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4U0G1	CLIP-associating protein 1-A OS=Xenopus laevis OX=8355 GN=clasp1-a PE=2 SV=2
Q7Z460	CLIP-associating protein 1 OS=Homo sapiens OX=9606 GN=CLASP1 PE=1 SV=1
A1A5K2	CLIP-associating protein 1-B OS=Xenopus laevis OX=8355 GN=clasp1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001513 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12348 all species →	CLASP_N	CLASP N terminal	Repeat	Interproscan
PF21041 all species →	XMAP215_CLASP_TOG	XMAP215/Dis1/CLASP, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024395 all species →	Domain	CLASP N-terminal domain	Interproscan
IPR048491 all species →	Domain	XMAP215/Dis1/CLASP, TOG domain	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR034085 all species →	Domain	TOG domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21567 all species →	CLASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005881 all species →	Cellular Component	cytoplasmic microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_025923-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.