Gene detail

Detailed information of FUN_026004-T2 in Colpophyllia natans

Genomic Location: contig_56:506975...534029
NR annotation: XP_020627173.1, myb-like protein A [Orbicella faveolata]
Species Colpophyllia natans · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_026004-T2

ATGTCACGCGTTTTAGGCAAATGTCTGTCGAATGCGCCAAACATACAGCTTCTAGACGAAGAGCAAGCGGCAAGGAGTATTGTGGTTTCAAACATATCCCCACAGACCACAAAGGAAGATGTTACTATTCATTTCCAGCGGCAGAAGAATGGTGGAGGTGAAATCCATAGTGTACACATTCCAGAGAAAGGAACCGCCGTCATAACGTTCGAGGAAAGCGAAGTGGCTGTAACAGTACTACGATATTCTCACACAATTAAGGAATCAACATTGAAGCTTCACAGACTAATTCCAGATGATTCCCCTGAGgTTCTTGCACTAGTAAAGGCACGTTTAAACTTTGATAGGTTTCAGTTGTCAGCTCAAGAGTGGGGAAAAGCACTTGAAGTTCTAAAGCATAAGACGGGAGTTCGATGTTCCTATGTTTCTAATAACGAATGTGTCCTCTCTGGAACGTTCAACCAGATTTTAACCGCGCAAACGTTTCTGGAAGATATTCGCCATGGACGATCTGTTGTCCTGCAGAAATCAATAGGAGGAAATGACGCATTTCATCAAAGTGATACAACACAGACCCAGCAAAATTCTTCAGCAACTTCAGACAATGATGTCACTGATAATTTCGATACTAAGGATCTCAACAGCTTTGAGGTGCAACCACAGTTCATGAAACTTATTAAACGGGTGTACGAGAAGAAGCTTCGATGCATAGAAGAAACGTATGGCCTGAAGATCGTCTGGACTGAAGACGCGTCCCAGGTACAAATGCGTCCCAGTAAAGCATCAAGCAATCCACGCAGTTATCAAGAAGGATGCGATTCGTTCATTGATCTTTACCAACGCGTTTTTCCGAACATGTGCCGAGAAGAAGTTGAAGTAGAAAGTGGAGCCCCGGTAATCGAGGCGATTAATTCCgtggaaactgaaaataatgttgttaTTGAAATGGCAGAAAACAAGTTAGTGGTCTATGCGGAAAAGAATGAAATTCTAAGATCTCTGCAAGCCTTAAGGAAAAAGCTTGGATTACAGCAGGGTGGTAGCAGGAGGGCCAGACGCAGTCATCAGAGAACTACAACTCCTGGTGGTCTAGAGAACAAGAAGACTCTTCAGGATAATCAATTCTCGGCATCGCCTTCGCAGTTCTTAAAACAGAGTTTGAGAAATGGAGTGTATTTCTCCTTATACCAAGGTGATATAACTGACGAGAGAGTGGATGCCATTGTCAATGCAGCCAACGAGTGTCTTCGACACGGTGGTGGTGTGGCAGCTGCAATAGTGCGCAAAGGAGGTCGTCAGATAGAAAAAGAGTCCAGACAAATAATGCTGGACAGAAATGAGCGGCCGCTCAGCATAGGCGATGCTGTATATACCAAGGGTGGCAATCTCTCTTGTCGATATGTCATACACACGGTTGGTCCGAGATGGAATCACCATGATAGACAAAGGAGCAGTTTGCTTCTTCAGCGAGCATGCATGGAAAGTCTCTGTCTTGCAGCAGAGTTGAAGCTTTCTTCCATTGCCTTTCCAGCAGTAAGCTCTGGTATTTTTGGCATGCCCAAAAGCCTTTGCGCCCAAGTAATGTTTAAAGCAATCGAGGAATTTAGCTCAAGTACCGACGCCAAATTCAGCACTCTTCGTGACGTGCGTATTGTTGTCATTGACGACGAAACAATCAGTGTCTTCCAGGAAGAGTTTGTGAACCGCTACAGTTCTCAAAGAACGTCATCAACAGCCTTACCAAACCCGGAACACCGCCCACGTCCATTAAGTGAGGAACAAGAAGTTTCTTCCGCCTCAAATATCCCTGTAAAAGATCCATCAGTCTCTTCATTTGAAAATTCATCCGAAGAACAACCCAAGAAGAGCGGTGAAGACAATGCCATTGTCGAGTCATCAAATGAGGAAGCTGATCCAAACCTTGAGAGCAAGAAACCAAATGAAACGTTTCCCGATAGTCTCAAGAAATTGCAACCTTATCACAACAGTAATACTTCAAACGCAAGCAAAGACAACCCACACAATGGCAACGAAAATACAAATGTAGAGACTGACCTTCACGGCTCAAACGAAGAAAAAAGCTTAAAAGGCTCTCCTTTAGAACAAATGTCCAACGAGAGCGGCAAAGATAGTGTTCATATTGAATCCTCGAGTGAAAGAGTTGGTCCACTCGGGGATGCCAATGAGCATCGTGAAGAGATACCAGTCGTCACCAAGGAAGGGCTCCCTTCCAACAACAATAATCCAAATGCAAGCAAAGACAACCCACCCACCGGTAACGCGAAGTCAAATGCAGAAACTGAAGTTCATGGCTCGAACATGGGAAAAGATATAGAAGGCTCTCCtttaatgaaaaattcaaagtcGTCAAACATGGCTACTGCAGCTAGATCATCATCTGGGAGGGGAAGAGGCATTCTTGCACCTACTTTTTATAGCAGACTACAACAAGAAGCATCAAAATCTGAGTCAAATGAAAGCACTGAATTAGCTAAAGCGAAGGGAACAAGAAGTAATTACGTTGGAAAAGGAAGGGGTATCACATTTTCTTTTAATACCTCACCACCAGGACCAACTGTTACAGAGGAAGGGAAACGTGTTGCCCAAAACCTTGGTAACAGAGTGAAACGCGACCAAACCGCTGATCCTGCTGAATCAATCATGCGCGAGGAAGAATTGGAGAGAAACGAATCCAGTGACGGACCTTTTGAGGAACAGAACCAAGATTTATATGAGAATTTTCAGAATAGTGATGACGGCAAGTGCGATGTTGTGCCCGGTAGCAGATTACCAAATAAAGATGGAATTACCAAGCCTGATGAAACCAAGATCGATACTAACGGTGGAAGGGAACTCCCGACAgataagaaaacaaacaaccGCGCTGGACCCAGTCAGCCCATTCATTCAAGCACTAACAAAACATCAGACAACTTAACACCGACACATGGAAATGTCAATGTAAGAGATATGGTGCAAGAACGAGAAGCTGCACACTCTGACGTAGGTTCAAAACCGCTCTCCGAGATTCAAACTGGTGAAGTAAAATGTTCCATGTGTATGAATTTAACCAATGATCCTGTTAGCCAAGTCGAATGTGGTCACTCCTTTTGCAAGTCCTGTGCGAAACACTTTGTTGAGAAGGCGATGATGTGTCCAGTttgcaagaaagaaaatctGCCTAGAGCAAACCAGCCAGTAGGGTACATGACTTGTAGGAGTGAGTCATTTAGTTCACTTCCGGGATACGAGACGTTTGGAACTATTGTCCTGACTTTCAACTTTGACTCAGGAATTCAAGGCTCAGAGCATCCAAATCCCGGAGAAATTTTCGTTGGCCTTTTCTGTACGGCCTACCTCCCTGACAACCCAGCGGGACGTGAAGTGTGTAGCCTGCTGAGGAGTGCTTTTAGTGCAAGGTTGATATTCACTATTGGGAAATGCCCAGCCACCGGAGAAGACAACAAAACGATTTCCAACGGCATCGAACTGAAAGCGAATCGAAGTGGGGGGCCAGCTAACTGTGGCTACCCAGATCCCAGTTACCTTGACCGGGTAAAGAGCCAGCTGGCTGAAAGAGGAATTATAGAGTTCCTAGAttag

Transcript

FUN_026004-T2

GCGCGGTCGTAACCCAAAATGTCACGCGTTTTAGGCAAATGTCTGTCGAATGCGCCAAACATACAGCTTCTAGACGAAGAGCAAGCGGCAAGGAGTATTGTGGTTTCAAACATATCCCCACAGACCACAAAGGAAGATGTTACTATTCATTTCCAGCGGCAGAAGAATGGTGGAGGTGAAATCCATAGTGTACACATTCCAGAGAAAGGAACCGCCGTCATAACGTTCGAGGAAAGCGAAGTGGCTGTAACAGTACTACGATATTCTCACACAATTAAGGAATCAACATTGAAGCTTCACAGACTAATTCCAGATGATTCCCCTGAGgTTCTTGCACTAGTAAAGGCACGTTTAAACTTTGATAGGTTTCAGTTGTCAGCTCAAGAGTGGGGAAAAGCACTTGAAGTTCTAAAGCATAAGACGGGAGTTCGATGTTCCTATGTTTCTAATAACGAATGTGTCCTCTCTGGAACGTTCAACCAGATTTTAACCGCGCAAACGTTTCTGGAAGATATTCGCCATGGACGATCTGTTGTCCTGCAGAAATCAATAGGAGGAAATGACGCATTTCATCAAAGTGATACAACACAGACCCAGCAAAATTCTTCAGCAACTTCAGACAATGATGTCACTGATAATTTCGATACTAAGGATCTCAACAGCTTTGAGGTGCAACCACAGTTCATGAAACTTATTAAACGGGTGTACGAGAAGAAGCTTCGATGCATAGAAGAAACGTATGGCCTGAAGATCGTCTGGACTGAAGACGCGTCCCAGGTACAAATGCGTCCCAGTAAAGCATCAAGCAATCCACGCAGTTATCAAGAAGGATGCGATTCGTTCATTGATCTTTACCAACGCGTTTTTCCGAACATGTGCCGAGAAGAAGTTGAAGTAGAAAGTGGAGCCCCGGTAATCGAGGCGATTAATTCCgtggaaactgaaaataatgttgttaTTGAAATGGCAGAAAACAAGTTAGTGGTCTATGCGGAAAAGAATGAAATTCTAAGATCTCTGCAAGCCTTAAGGAAAAAGCTTGGATTACAGCAGGGTGGTAGCAGGAGGGCCAGACGCAGTCATCAGAGAACTACAACTCCTGGTGGTCTAGAGAACAAGAAGACTCTTCAGGATAATCAATTCTCGGCATCGCCTTCGCAGTTCTTAAAACAGAGTTTGAGAAATGGAGTGTATTTCTCCTTATACCAAGGTGATATAACTGACGAGAGAGTGGATGCCATTGTCAATGCAGCCAACGAGTGTCTTCGACACGGTGGTGGTGTGGCAGCTGCAATAGTGCGCAAAGGAGGTCGTCAGATAGAAAAAGAGTCCAGACAAATAATGCTGGACAGAAATGAGCGGCCGCTCAGCATAGGCGATGCTGTATATACCAAGGGTGGCAATCTCTCTTGTCGATATGTCATACACACGGTTGGTCCGAGATGGAATCACCATGATAGACAAAGGAGCAGTTTGCTTCTTCAGCGAGCATGCATGGAAAGTCTCTGTCTTGCAGCAGAGTTGAAGCTTTCTTCCATTGCCTTTCCAGCAGTAAGCTCTGGTATTTTTGGCATGCCCAAAAGCCTTTGCGCCCAAGTAATGTTTAAAGCAATCGAGGAATTTAGCTCAAGTACCGACGCCAAATTCAGCACTCTTCGTGACGTGCGTATTGTTGTCATTGACGACGAAACAATCAGTGTCTTCCAGGAAGAGTTTGTGAACCGCTACAGTTCTCAAAGAACGTCATCAACAGCCTTACCAAACCCGGAACACCGCCCACGTCCATTAAGTGAGGAACAAGAAGTTTCTTCCGCCTCAAATATCCCTGTAAAAGATCCATCAGTCTCTTCATTTGAAAATTCATCCGAAGAACAACCCAAGAAGAGCGGTGAAGACAATGCCATTGTCGAGTCATCAAATGAGGAAGCTGATCCAAACCTTGAGAGCAAGAAACCAAATGAAACGTTTCCCGATAGTCTCAAGAAATTGCAACCTTATCACAACAGTAATACTTCAAACGCAAGCAAAGACAACCCACACAATGGCAACGAAAATACAAATGTAGAGACTGACCTTCACGGCTCAAACGAAGAAAAAAGCTTAAAAGGCTCTCCTTTAGAACAAATGTCCAACGAGAGCGGCAAAGATAGTGTTCATATTGAATCCTCGAGTGAAAGAGTTGGTCCACTCGGGGATGCCAATGAGCATCGTGAAGAGATACCAGTCGTCACCAAGGAAGGGCTCCCTTCCAACAACAATAATCCAAATGCAAGCAAAGACAACCCACCCACCGGTAACGCGAAGTCAAATGCAGAAACTGAAGTTCATGGCTCGAACATGGGAAAAGATATAGAAGGCTCTCCtttaatgaaaaattcaaagtcGTCAAACATGGCTACTGCAGCTAGATCATCATCTGGGAGGGGAAGAGGCATTCTTGCACCTACTTTTTATAGCAGACTACAACAAGAAGCATCAAAATCTGAGTCAAATGAAAGCACTGAATTAGCTAAAGCGAAGGGAACAAGAAGTAATTACGTTGGAAAAGGAAGGGGTATCACATTTTCTTTTAATACCTCACCACCAGGACCAACTGTTACAGAGGAAGGGAAACGTGTTGCCCAAAACCTTGGTAACAGAGTGAAACGCGACCAAACCGCTGATCCTGCTGAATCAATCATGCGCGAGGAAGAATTGGAGAGAAACGAATCCAGTGACGGACCTTTTGAGGAACAGAACCAAGATTTATATGAGAATTTTCAGAATAGTGATGACGGCAAGTGCGATGTTGTGCCCGGTAGCAGATTACCAAATAAAGATGGAATTACCAAGCCTGATGAAACCAAGATCGATACTAACGGTGGAAGGGAACTCCCGACAgataagaaaacaaacaaccGCGCTGGACCCAGTCAGCCCATTCATTCAAGCACTAACAAAACATCAGACAACTTAACACCGACACATGGAAATGTCAATGTAAGAGATATGGTGCAAGAACGAGAAGCTGCACACTCTGACGTAGGTTCAAAACCGCTCTCCGAGATTCAAACTGGTGAAGTAAAATGTTCCATGTGTATGAATTTAACCAATGATCCTGTTAGCCAAGTCGAATGTGGTCACTCCTTTTGCAAGTCCTGTGCGAAACACTTTGTTGAGAAGGCGATGATGTGTCCAGTttgcaagaaagaaaatctGCCTAGAGCAAACCAGCCAGTAGGGTACATGACTTGTAGGAGTGAGTCATTTAGTTCACTTCCGGGATACGAGACGTTTGGAACTATTGTCCTGACTTTCAACTTTGACTCAGGAATTCAAGGCTCAGAGCATCCAAATCCCGGAGAAATTTTCGTTGGCCTTTTCTGTACGGCCTACCTCCCTGACAACCCAGCGGGACGTGAAGTGTGTAGCCTGCTGAGGAGTGCTTTTAGTGCAAGGTTGATATTCACTATTGGGAAATGCCCAGCCACCGGAGAAGACAACAAAACGATTTCCAACGGCATCGAACTGAAAGCGAATCGAAGTGGGGGGCCAGCTAACTGTGGCTACCCAGATCCCAGTTACCTTGACCGGGTAAAGAGCCAGCTGGCTGAAAGAGGAATTATAGAGTTCCTAGAttagcTGACTTAAAAGAATCCAGGACCGCAGCTATCACAGGGGCGAAGACGGAGAGGGGAGTTGACCCTTTCCCAACATTTTAACTTCCTGCAGTGTTAGATGAAGATAGTTTACTATGATTAATTTAGCTTTGTGAGTAGATTTTCAGTTGATCCGATCTTCCGTTGGTTCGATACGCTGGATTCAATCATATACACAGAAATGCCAACTATTGATGCATTGCGTTTGGCGCAGTTACACAATCATATCGACAAGACGAATCACGAAGTGACAACCCGAGGAAAGGTTGATGCTTTTACTGGTAGTTGTTCTTTTATTCAGCGACTTTGTGGTAGTACTACGGTTTACCGTCAGAGCAAGAAGTCAACACGGACAGTTTGGTTGTAATAGATAACACATATCATCTCCGCATCCTCTTCAGTGGGACCACtcgtgttttttgtttttgttttgctttttagtAAATACCAACTTTTAtcatccaacactgcttcgtagagtacaaataacgcgcgaaacgagtacagatatcacacgatatttgtactcgtctcattcacCCAACCGCGCGAAaatcagaattttggggaaac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TDB6	E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q9WYX8	Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1
Q4J9D2	Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR052056 all species →	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453 all species →	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289 all species →	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_026004-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.