Gene detail

Detailed information of FUN_026010-T1 in Colpophyllia natans

Genomic Location: contig_56:583819...591455
NR annotation: CAH3138538.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_026010-T1

ATGGCTCGAAGTAGAAGCTTTTTAGATGATCTAAAGAAGGAAATAGAATGCCCAGTGTGCCAGGAGCAGTTTAGTGAAACCAAAGAGCCGAAAATCTTAAAGTGCTTTCATACGTTTTGCAAATCATGTTTGGAAGGTTGGCTGCGACAGCAAGACGGTGGAACAATGAGTTGCCCAAAATGTCGTGAAATCAGTGAATGTCGAAACGACGACATTAACAGCCTTCCATCCAACctgttttacaaacaaatggtCGACATTGTCGAGGCTTATAGCGGACAAGGGCAGGCGAATTCAGCACACTGTGGAAGCTGCGACGAAAATAGCCCATTAAGTTGTTATTGTGCTGAATGCAGCAGCTTTCTTTGCGACGAATGTGCTGGGGCGCATAGaaagttgaaagtttttttAGGCCATCAAGTTAAAGAAATTGGAAACTTTGGTTCCAACGATGTGCAAGATTACGCTCGGAGAGCGAACGTTTGCAATCAACACAAAGATGAACTTCGTTTTTTTTGTGAACCATGTGAAATTTGCATCTGCCGTGATTGCGCCATATTGGATCATGTAGATCATAAGAAAATTTCCCTGGAGAAAGGACTTGAAAAGAAGAGTTcagaaattgaaatgaaattgcTGGAAGTTGAAGAGAACGGCACTCGATTAATGAAACACAAAGCATATCTGGAGAAACGACGACTTAAAGTAGACAATAGCTTCAATCAAGCTACAAAAACAGTCCACGAGACTGCAGAAACCTGCATAAATTTAATTCGTCAGCACAAAGAAAACGTGACAGGACAGTTAATCAAGCAGAACGGAACTTTTCAAATTTCATTCGTAAATGAAATGACAAGGCTGGATGGAAAACTAACAGAGATTCGCGATAGTTTAGAGTTTGGACGAGAAGTTCTTTCGCGAGAAAATTTGCCGGAGATTTTAAACGTAGAACAATTGTTAGAGAGAAGATTTCGAGAACTTTCAACTCCCTTCAGGCAAATGCTAGATCTCACCGTAGTCGGATACACTCCAAATGATGTATCCTCTCTTATAACATTCCCTGGAGAGCTATTCAGAAGCAACACCGAACCATCCTTATCAGTAGCCGAAGGCAAGGGTTTGACTGAGGCATTGAAAGGGGAAAAAgcaatatttacaataataaCCAAGGATTCCAAGAACCAGACAACTTACAGCGAAATCGACCAAATAAATGTTGAGATCATTTCCAAAACAAAGGAGACCTTGAAAACTATCATaactgattataaaaatggGCACTATCAAGTAATGTACTCGTCTAATGAAGCAGGTGAATTCAATGTGTCTATTACAGTTAAAGGAGAAGCTATAAAAGACAGTCCGTTCAGACTGACAGTGACAGAGAAGACAGCAACAGGTTTATCAGCAGAAAGCGATGATGATTGGGTAAAGTCGTCTAGGAGGTCCTTGATAAAAGGCAGGAAAAAGAAAGGGAGAGAAAGTTTAAAGAGACACCAAGTTGGTAATAATCGGCATAAGCCATCTACATCATTAATAGATTTTGCTGCTGGTGGAGCATGCTTAGCAACTGAATGCCCCATCTGCCTCGATACCGTGACTAATGCACGGACTTTGAAGTGTAAACACGTCTTCTGTACAGACTGTGTGGAGACTGCGCTAACGCAGAACAACAGATGTCCCGTGTGTAAAGAAGTGCAGGGCGTTGTGAGAGGAAATCAACCTGAAGGACACATGCAGTTTCACAGAAGACGTGAACGCCTTCCCGGCTATAATGATTGTGGCACAATTGTCATCAACTACTATTTTCCACGGGGAACCCAAGGCAAGGAACATCCTAACCCTGGCCGAAGGTACGACAGCACCGAACGTACTGCCTATCTTCCTGATAACCGAGAAGGTAATGAGGTCCTGCAGCTTTTGAAAAGCGCTTTTGATGCTCGATTGGTTTTTACTGTTGGAACATCAGTAACAACAGGAATGGACAACCAGATCACGTGGAATGATATCCACCACAAGACAAAGATTTATGGCGGTCCTCAATGGGATGGTACAAGACACAAGATCCACGCCTTAAACAGAGGATATCTTCGCATTGTCCTCTCATTCAAAGACCAGATATCAGCGGACATAGCAAACAAACACCTCTCGGACTTGAGTAATAAACTTGACCGCAAACTTCAGCCGGTTTTCAGAAGCCCTAAAGTTGGCGATGATCTCAAAGTGCAAGATCCCAAACCAGCTGTGATCAATCAGCActttggATATCCAGATCCTGACTATCTGAGGAGAGTCAAAGAAGACCTGGCTGCTAAGGGAATCCGCTGA

Transcript

FUN_026010-T1

Protein

Uniprot

Uniprot term	Description
Q3UIR3	E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8TDB6	E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q80V91	Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus OX=10090 GN=Dtx3 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR039398	Family	Deltex family	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622	DELTEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan