Gene detail

Detailed information of FUN_026062-T1 in Dendrogyra cylindrus

Genomic Location: contig_58:1935701...1937620
NR annotation: KAJ7384843.1, Protein fem-1 B [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZM55	Protein fem-1 homolog B OS=Gallus gallus OX=9031 GN=FEM1B PE=2 SV=1
Q6GPE5	Protein fem-1 homolog B OS=Xenopus laevis OX=8355 GN=fem1b PE=2 SV=1
P0C6P7	Protein fem-1 homolog B OS=Rattus norvegicus OX=10116 GN=Fem1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10349	FEM1B; protein fem-1 homolog B	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.