Detailed information of FUN_026082-T1 in Siderastrea siderea

Genomic Location: contig_25:3484449...3486979
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13877
all species →		RPAP3_CPotential Monad-binding region of RPAP3DomainInterproscan
PF15867
all species →		Dynein_attach_NDynein attachment factor N-terminusFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025986
all species →		DomainRNA-polymerase II-associated protein 3-like, C-terminal domainInterproscan
IPR042422
all species →		FamilyCoiled-coil domain-containing protein 103Interproscan
IPR031733
all species →		DomainDynein attachment factor, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR28572
all species →		COILED-COIL DOMAIN-CONTAINING PROTEIN 103Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003351
all species →		Biological Processepithelial cilium movement involved in extracellular fluid movementInterproscan
GO:0007368
all species →		Biological Processdetermination of left/right symmetryInterproscan
GO:0036157
all species →		Cellular Componentouter dynein armInterproscan
GO:0036159
all species →		Biological Processinner dynein arm assemblyInterproscan
GO:0070286
all species →		Biological Processaxonemal dynein complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23731CCDC103; coiled-coil domain-containing protein 103-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026082-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
9.4Max TPM
0.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 5.24 7.98
unannotated 1 1 5.53 5.53
live coral tissue/skeleton 1 1 9.41 9.41

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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