Detailed information of FUN_026096-T1 in Siderastrea siderea

Genomic Location: contig_25:3788451...3793998
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17245
all species →		CDC24_OB2Cell division control protein 24, OB domain 2DomainInterproscan
PF17244
all species →		CDC24_OB3Cell division control protein 24, OB domain 3DomainInterproscan
PF17246
all species →		CDC24_OB1Cell division control protein 24, OB domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035200
all species →		DomainCell division control protein 24, OB domain 2Interproscan
IPR012340
all species →		Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR035203
all species →		DomainCell division control protein 24, OB domain 3Interproscan
IPR035201
all species →		DomainCell division control protein 24, OB domain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36033
all species →		NUCLEIC ACID-BINDING PROTEINS SUPERFAMILYInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_026096-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026096-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026096-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
40TPM > 0
7Conditions
424.7Max TPM
46.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 10 50.92 247.76
holobiont · low.pH Control.temp 20 9 73.63 424.71
holobiont · control.pH_high.temp 20 7 30.26 266.12
holobiont · control.pH Control.temp 19 8 42.02 211.05
Whole organism 4 4 4.98 6.31
unannotated 1 1 2.03 2.03
live coral tissue/skeleton 1 1 6.84 6.84

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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