Detailed information of FUN_026122-T1 in Acropora pulchra

Genomic Location: ptg000020l:4840932...4844028
NR annotation: XP_029201345.2, spondin-1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8VCC9Spondin-1 OS=Mus musculus OX=10090 GN=Spon1 PE=1 SV=1
P35446Spondin-1 OS=Rattus norvegicus OX=10116 GN=Spon1 PE=1 SV=1
Q6P4U0Thrombospondin type-1 domain-containing protein 7B OS=Mus musculus OX=10090 GN=Thsd7b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001178 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF19028
all species →		TSP1_spondinSpondin-like TSP1 domainDomainInterproscan
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR044004
all species →		DomainSpondin-like TSP1 domainInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR051418
all species →		FamilySpondin/Thrombospondin type-1 domain-containingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11311
all species →		SPONDINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0031012
all species →		Cellular Componentextracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_026122-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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