Detailed information of FUN_026164-T1 in Siderastrea siderea

Genomic Location: contig_25:4683141...4720938
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_026164-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR026652
all species →		FamilyCentrosomal protein of 128kDaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46657
all species →		CENTROSOMAL PROTEIN OF 128 KDAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000922
all species →		Cellular Componentspindle poleInterproscan
GO:0005814
all species →		Cellular ComponentcentrioleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16460CEP128; centrosomal protein CEP128-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026164-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
40TPM > 0
7Conditions
242.3Max TPM
22.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 10 18.14 116.45
holobiont · low.pH Control.temp 20 5 16.90 92.60
holobiont · control.pH_high.temp 20 10 29.94 225.53
holobiont · control.pH Control.temp 19 9 29.70 242.30
Whole organism 4 4 10.26 12.82
unannotated 1 1 9.47 9.47
live coral tissue/skeleton 1 1 8.86 8.86

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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