Gene detail

Detailed information of FUN_026166-T1 in Acropora pulchra

Genomic Location: ptg000020l:5451933...5462887
NR annotation: XP_029201311.1, 26S proteasome regulatory subunit 8 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_026166-T1

GGCGTGAAAATTTCTCTAAGTCATTCCATCATGGCGGCCGGTACGGCTGTAATGCATTTTCCAAGTCCGCGAAGTACCGTGAAGAAAGAAGAACCTGCAAGACGAATACAGAAAATCAAAGCTGATGAGATGGAAGTAGAAGAAGTGAAACAGCATGAAGGAATTCAGCAGTATTATATAACCAAAATTGAAGCCCTCCAGATGGTTGTTACAGAAGAAATCAAGAACTTAAGGAGACTTGAAGCCCAGAGAAATGAACTGAATGCTAAAGTACGTATGTTGAGAGAAGAACTGCAGCTTTTGCAAGAGCAGGGATCATATGTTGGTGAGGTAGTCAAGCCAATGGATAAGAAGAAGGTTCTAGTCAAGGTTCATCCCGAAGGCAAATTTGTGGTTGACCTTGACAAGTCAATTGAGATGTCAGAGGTCACACCAAATTGCCGAGTGGCTTTAAGAAATGACAGTTACACTCTTCATAAGATACTTCCAAACAAGGTGGATCCTCTTGTCAGCTTGATGATGGTAGAAAAGGTCCCAGACTCCACATATGAGATGGTTGGTGGGCTGGACAAACAAATCAAGGAAATTAAGGAGGTTATTGAACTCCCTGTCAAGCATCCTGAACTGTTTGAAGCCCTTGGAATTGATCAGCCCAAGGGAGTGTTACTCTATGGGCCACCAGGCACAGGGAAGACGCTGCTTGCTCGGGCGGTCGCTCATCACACAGAGTGTACCTTTATCAGGGTGTCTGGATCAGAACTGGTGCAAAAGTTTATTGGAGAAGGAGCAAGGATGGTTAGAGAATTGTTCGTCATGGCCAGAGAACATGCACCTTCTATTATTTTCATGGATGAAATTGATTCCATAGGATCATCAAGGTTGGAAGGTGGATCAGGAGGCGACAGTGAAGTACAAAGGACCATGTTGGAATTGCTGAACCAACTTGATGGGTTTGAGGCTACCAAGAATATCAAGGTTGTTATGGCAACAAATCGTATCGACATTTTAGATTCTGCTCTTTTACGACCAGGACGTATTGACAGAAAAATTGAGTTCCCACCCCCCAATGAGGAGGCAAGACTGGATATCCTGAAAATTCATTCCAGAAAAATGAATTTGACAAGGGGTATCAACCTACGAAAAATTGCCGAGCTCATGCCTGGCTCATCAGGAGCTGAAGTCAAGGGCGTTTGTACAGAAGCTGGGATGTACGCACTGAGGGAAAGAAGGGTTCATGTCACGCAAGAAGACTTTGAAATGGCTGTCACAAAGGTGATGCAAAAAGATTCAGAAAAGAACATGTCGATGAAGAAGCTTTGGAAGTAGATCCAGTGAAAAGCAAGATCACAAAACAGTCAATCGTTTAAACACTAACAAACTGATATTTTAAAATTGAGTGCCTGCCCTTTTTGTTCCTTGGAGCATTCTCCATTTAGCACAAGAGAGGCACAAAAATGCATTATAAACCTGAGAAAATGAAGCTGAAATCTGAGTTTACCTATGAGACAATTTTCATGTTTCTTGCCCAAGAGAGTTGTGCTAAATATTTCAGTTTGTTTCTCATGTATTTTCATTGTGGTCTTTCCAAAGTGTAGGATGAGGTAGAATGATTGGGCAGTTGAGAAGTGAGAAAGCATGTGTGAGTTTGAGCAGTGCAAGCATCAACATCTTCTCTCAAACTAGAAATCCACAGGCTTGGAATCTGTGGTGTGTTTGTATATCATTCCAAGGTTTTGAAAGCACTGTAGGGTCCGGGACCCCATGCAATAGAAAGTTCCATTTTTACTACATCATAGGTAATGATTTGTTAGTGGAGTTTCACAATAATTTGGCATTTTGAACATCTAGTGAGTGAACACATAACTAAGCAAAATTAATCATTTAATATAAAAACAAAGAAACAAGCTCATTGTACTTGATGGCGCCTTCATAAACAGTCATTGTTCTGTCTGATTTTGTGGCATCCATTGTGCTACAGTATTTTATTTCCAATACAATACTGATAATAGAGATTTGAGCCATATGCAATCATTTATGACAATAATTATCATCAAAGATTACCAGCATATCTACTTTAAAATCTGTTGGTCAGAGCTTTTACTTAAGCTCATTGCCTTGTTTTGCAATAAGGTAGCAATGGGAGCACAGGCTTTCCAATCTGTGGTAGTAATAACTACTTGAGTTGGTTTGGAGATCTTGTTAGTTAAAGCCACATGTTTTTATTGTTGACACTACAGGGACACCCCCATTGAGCCTGAGTGGATTGCTTAGACTCTGGGGAGATCTTTTGTACTAACTATTTGATCAGATTGCAGCTGTATTTGGTAATACACAGGCCAATGTATTATCTTCAACCAATCTGCTGGTGGTGATAGTTAAATTCTATAGTATGGTTTGCAGGAAAATCATCGCATTCAAGCAGTCAGTTTTCCTGCAGTGCAGTAACTTTGCTTCCAAATTCTCGCTTTAATTTATTTTTTTTTATTTATTATTTTTTTTTCATTTCCACTATCTGGTTTTCATGCTGCCTTCACCTTATTATGACCAATATAATGAATAAACAGCTTTGTTTAGCGAATCAAATCGTCTATTTTTTGCCTGAAAAAGAGTTTATCTTTTGCCTTATGTGAACTGTAATGATTATGTAAATACATGATGTCCAGTCTCTGTCGGTTGTACCTCATGGCTTGATGGGCTGCATCATCAAATTATTTAGTGCTGCTGAATTTCATTAATACACCCAAACCAAGGTCACACATACCATTCAGTACGAAAGGTTTTGGAACTATTTTAAAGTGCTACTATGATCAAATTCTTGTCCCTTGAATTTTTAGTTTTATCACATTGAATTCCAAGAGATTAGAAACGCCGTTTACAGTGTCGAAACATCTGCATTCCGGATAATTATATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62194	26S proteasome regulatory subunit 8 OS=Bos taurus OX=9913 GN=PSMC5 PE=2 SV=1
P62195	26S proteasome regulatory subunit 8 OS=Homo sapiens OX=9606 GN=PSMC5 PE=1 SV=1
P62196	26S proteasome regulatory subunit 8 OS=Mus musculus OX=10090 GN=Psmc5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000573 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF16450 all species →	Prot_ATP_ID_OB_C	Proteasomal ATPase OB C-terminal domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050221 all species →	Family	26S Proteasome Regulatory ATPase	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR032501 all species →	Domain	Proteasomal ATPase, second OB domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23073 all species →	26S PROTEASOME REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008540 all species →	Cellular Component	proteasome regulatory particle, base subcomplex	Interproscan
GO:0036402 all species →	Molecular Function	proteasome-activating activity	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03066	PSMC5, RPT6; 26S proteasome regulatory subunit T6	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.