Detailed information of FUN_026183-T1 in Acropora pulchra

Genomic Location: ptg000020l:5738617...5741576
NR annotation: XP_015758864.1, PREDICTED: protein LSM12 homolog [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PBA2Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1
Q6GP89Protein LSM12 OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1
Q0VCF9Protein LSM12 OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008416 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21166
all species →		LSM12_LSMLSM12, LSM domainDomainInterproscan
PF09793
all species →		ADAnticodon-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039683
all species →		FamilyProtein Lsm12-likeInterproscan
IPR048478
all species →		DomainLSM12, LSM domainInterproscan
IPR019181
all species →		DomainLSM12, anticodon-binding domainInterproscan
IPR047574
all species →		DomainAD domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13542
all species →		LSM12 HOMOLOGInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_026183-T1 in Acropora pulchra.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23643LSM12; protein LSM12-Circadian rhythm - flyko04711deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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