Gene detail

Detailed information of FUN_026183-T1 in Siderastrea siderea

Genomic Location: contig_25:4973492...4981304
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_026183-T1

ATGGAGAGGGATGCAAGTGCCGAGGAAATTGAAGAAGAGTTTGTAGCTACAGATTGCATGAGAGAACCTGTAAATAGTGCACGCGCTGTTGAAAGCTCTGCACGTGCGAAAATGGAGGAAAAGGAAACCAGTGTAGCGCAAAGCGCGGAAGCGAATGCACGTGAAAATGCCGGGGAAGAAATGCAAGCTGCCGGTGGTGATGAAATCCGAGACGCACAAATGgagaaacaaaagaagaaacggaaaagaaggaaaaagaaaacgcaacaTCATGATTCTACACCTGCAACGTCAGCTGTTTCTGGTTGTGATGCAATAACAGGAGATTGTGATGTTACAACTCCCGATTCGACAGAACAACACAACGATTGCGCTGAAAAGGCACAAAGTTGCGCTGATTCTGGTGAAGTTTCAAAGCAGTATCAAACAGACGGCAAGAAAAGTCGACGATCTAGAAGAAGACGTAGAAAGAGTTCTCAGCTGAGCGAAGGAACATCTGAAGAAGCTCCTCCTGTGCAAGACAACATGGCTAAAGGAGGTGACATAAACACGAGCCTTGCAGGAGACGATGATAAAGATGGGCAGCAAGATTTGCTGGTTTCTGAGAAGGCAAGTAGTgggaaaaagaagagaaacagACGAAGAAAACCTAAGAGAGTTCATGAAGACGCCAGCCTCGAAGGAACTGGTGAAATGAGTCGGGAAAGCTCTACAAACAAAGATCTTCAAACGCCAGGTAGTGGGAGGCCTCAAGGTGAAAATAAAGGTTTGGGGACAAGAAATGTGAATCATACGACTCCAAAGTCTCATGAAAGATCGGCAAGAGGAAATTCACCGCATAGAACTCCCAGGAGTCGTGGCAATAAACGGAGACCGCTCTACGAAAAGTACTGGTCTACTGAGAACGTATCGGCTGGCTTAAAGAGAGGAGAGCTTGTTAAAGGTGTTTTGAGGATAAGCCCGAGGAACTATGAGCTTGCGTGGGTGACGGTGCCTGGACTGAAACGTGACGTGGTACTGGAGGGAATGTTGAGACGAAACAGAGCTCTCAATGGTGATGTAGTTGCGCTGGAGATTTTACCCACAGAGAAATGGAAAATTATGAAGGAGGAGTTAGTTTACAATGGTTTCACTCCAAATCACAATCATGTGAGTGTCGAGGAGGCAACAGAGAGTTTGGATGCCTTGACACTAAGCCCGGGAAATGAGGTGCAGTCTCCCGTAACACCAATTCTCCAAACGCCAGGATCAAAGCAAAGGAAGAATCACATCGACATCAATCAAGTCCCAGAGAAATTCTTGCAAAGAACAGGCAAAGTTGTTTACATCATTGAAAAGAAACACTCTCGAGTGGCTAGCGGACGTCTGAAGCCCTTCCCCCACCCTAAGGAATTTCCCGATGGATGTTTCTCCCCAATTGACAGTCGGTTGCCAAGGATACGCATCCCACGTGAGAACTGCCCACCAGGCTTCTTTGATAGACCACGTGACTTTGAAAATACGCTGTTAGTGGCGCGAATTACCAGTTGGCCAGATACCTCTTCTAGAGATTCTTTCCTAGCGATCGGCACGATTGCGAGAAGTCTGGGCGAGGCGGGTGAGATTGAACCAGAAACCGAGGGGATCCTCTTGGAGTACGGGATCGATTCAGGGCCGTTTTCAGACGAGGCTCTGGAGTGTTTACCACAGGAAACACCTTGGAAGATACCCGAGAGAGAGTTAGAGTACAGAAGAGATTTTCGGAACGATTGTGTTTTTACAATTGATCCTCTTACAGCAAGAGATCTCGATGATGCAGTCCACTGCAAGAAAACTGAAGAAGGCCGCTTTGAGGTGGGCGTTCACATCGCTGACGTGAGCTTTTTTGTTCGCCGAGGTACTGCGCTGGACGAAGTCGCTTTGGAAAGGGGGACTTCCACCTACATGGTGCAAAAAGTCATCCCCATGCTCCCGCGACGCTTATGCGAAGAGCTGTGTAGTTTGAACCCTGGAGAGGATCGTTTGACTTTCTCCGTTGTTTGGCAAATGTCTGATAAAGGAGAAATCTTAGACGAGTGGAAAGGAAGAGGGATCATTCGCTCCCGCATCAAGATGGCGTATGAACACGCCCAAGATATGATTGAGAAACCAAACAGGCAGTGGAATCTGAACGAGCTGCCTCCGATCTCAGACGGTGCGACAGGGGAAGAAATTTCTGCGCAGGTGAATCAGCTTCATAAGTTTGCAGTGCGCCTTCGTCGAAACCGTATTGAGAATGGCGCGTTGCGCCTTGATCAAGTGAAAATCCGGTTTGACTTGGATCAAGAAACCGGTTTGCCTAATGGATACCACGTGCATAAGCAACGCGATGCGAACAAGCTTATTGAAGAGTTTATGCTGCTTGCGAACATGGCGGTAGCACATCATATTTATGCTGTTTATCCAGAGATGGCGCTGTTAAGACGCCATCCCAAGCCCCACCAGAAGCAACTCGATGATCTGATGGAGTTATGCAAATCGTTTGGTATCTGCTTCAACGGGACCTCATCCAAGACCATCCAAGAGTCTCTTGCACAGTTTCCCCTGTCCTCTCCCGAGAGGGAAGTTTTGGTCAATTTGACCATGCGACCAATGAAGAACGCGGAGTACTTTTGTACAGGGTCCGTAGAGGAAGACGAATATGGACACTACGCTCTGAGCGTACCTCTATACACGCACTTTACGTCCCCGATCAGAAGATACCCGGATTTAGTAGTGCACAGGCTCTTGGCCGCAAGCCTCGGCGTAGATGAACCGCTGAACCAAGGGCCCGACAGCATTGATGTTATAGCACAGCACTGTAATGATCGTAAACTCGCCGCCAAGCAAGCCAGTGAACTGAGCAATGATATGTTCTTTGGTATTTTTGTGCGTGAAAGCGGTCCTCTTGAAGAAGACGGCATAGTTTTGAATGTCATGGACCAGTCTTTAGATGTTTTGGTACCTGAACTGGGTGTGGTTAAGAGGGTGTACATGCAGTTCTGCCCCGGAGTGAAAAGCTTTGCGTTTACCAAGGGAGAGAAGGGAAAACCGAATGAGTTGTGCCTGCTTTGGAGTGTCAAGCTCAAATCGTGTGATGACACTTACGATGAGGAACAAGTGTTAAAGATTTTTCACCAGGTGCGGGTGATCTTGACCACTGAAAGCGAAACGGAGACCAAAACGCCGAATCCTTTCAAAGTTATGGCCAAACTTGTTCCAAAACTGAACTGTGGAGACGAATATTACATTCCGACAACTCCAGCAGTTAACAAGTCTCTCACGAAGAAAAAGACTGCTGCCAACTCTGCAGACGTAAGTCTTCCGAAAACTTCCGATGATATCCGAAAGAAGCTTTTTGATTCGGAACAGGTCCCGGAAGCATCTCGTGGTCCTAACGTCATCTTCGGGTCCGAAGGAGGGGATGGCGTCAAGAATTGTGAAGCAGAAGAAACAGCGTCGCTTGGTTCTGATGATGTTATTGTGGAATCCGAAGAGACAAGCAACTTACCAAATGCTAACGATGAGTCTACGAACGTTGCCGAAGATGAATCCGATGATGTTATTGTGGAGTCCGACGAGGAGAATGACAGTCTGCAGAATGTAAACAACGAATCCACGAACAAAGCCGACGATGaatctgatgacgtcataatcgAGTCGGAGTCAGACGCCGACTAA

Transcript

FUN_026183-T1

cgtgacttccggaGGCCTCAAAGTCTCTTGGGAAAGGGGGaacaaaacaaatatggcggacTGAGCAAAAGATCTCAAATTCGTCGTATTCCTGCCCCCCTTCGAGCACCCAGGGTGATTTTTGGTTCGTCAGATAGCCACTCAGGGTTACAGCTGGAGTCATATGTGATACGCCTGATAAGCGAGGCCAGACGAATCGAAAGTGTTTTGAGTGAATTGATTTGAACGAAATGGAGAGGGATGCAAGTGCCGAGGAAATTGAAGAAGAGTTTGTAGCTACAGATTGCATGAGAGAACCTGTAAATAGTGCACGCGCTGTTGAAAGCTCTGCACGTGCGAAAATGGAGGAAAAGGAAACCAGTGTAGCGCAAAGCGCGGAAGCGAATGCACGTGAAAATGCCGGGGAAGAAATGCAAGCTGCCGGTGGTGATGAAATCCGAGACGCACAAATGgagaaacaaaagaagaaacggaaaagaaggaaaaagaaaacgcaacaTCATGATTCTACACCTGCAACGTCAGCTGTTTCTGGTTGTGATGCAATAACAGGAGATTGTGATGTTACAACTCCCGATTCGACAGAACAACACAACGATTGCGCTGAAAAGGCACAAAGTTGCGCTGATTCTGGTGAAGTTTCAAAGCAGTATCAAACAGACGGCAAGAAAAGTCGACGATCTAGAAGAAGACGTAGAAAGAGTTCTCAGCTGAGCGAAGGAACATCTGAAGAAGCTCCTCCTGTGCAAGACAACATGGCTAAAGGAGGTGACATAAACACGAGCCTTGCAGGAGACGATGATAAAGATGGGCAGCAAGATTTGCTGGTTTCTGAGAAGGCAAGTAGTgggaaaaagaagagaaacagACGAAGAAAACCTAAGAGAGTTCATGAAGACGCCAGCCTCGAAGGAACTGGTGAAATGAGTCGGGAAAGCTCTACAAACAAAGATCTTCAAACGCCAGGTAGTGGGAGGCCTCAAGGTGAAAATAAAGGTTTGGGGACAAGAAATGTGAATCATACGACTCCAAAGTCTCATGAAAGATCGGCAAGAGGAAATTCACCGCATAGAACTCCCAGGAGTCGTGGCAATAAACGGAGACCGCTCTACGAAAAGTACTGGTCTACTGAGAACGTATCGGCTGGCTTAAAGAGAGGAGAGCTTGTTAAAGGTGTTTTGAGGATAAGCCCGAGGAACTATGAGCTTGCGTGGGTGACGGTGCCTGGACTGAAACGTGACGTGGTACTGGAGGGAATGTTGAGACGAAACAGAGCTCTCAATGGTGATGTAGTTGCGCTGGAGATTTTACCCACAGAGAAATGGAAAATTATGAAGGAGGAGTTAGTTTACAATGGTTTCACTCCAAATCACAATCATGTGAGTGTCGAGGAGGCAACAGAGAGTTTGGATGCCTTGACACTAAGCCCGGGAAATGAGGTGCAGTCTCCCGTAACACCAATTCTCCAAACGCCAGGATCAAAGCAAAGGAAGAATCACATCGACATCAATCAAGTCCCAGAGAAATTCTTGCAAAGAACAGGCAAAGTTGTTTACATCATTGAAAAGAAACACTCTCGAGTGGCTAGCGGACGTCTGAAGCCCTTCCCCCACCCTAAGGAATTTCCCGATGGATGTTTCTCCCCAATTGACAGTCGGTTGCCAAGGATACGCATCCCACGTGAGAACTGCCCACCAGGCTTCTTTGATAGACCACGTGACTTTGAAAATACGCTGTTAGTGGCGCGAATTACCAGTTGGCCAGATACCTCTTCTAGAGATTCTTTCCTAGCGATCGGCACGATTGCGAGAAGTCTGGGCGAGGCGGGTGAGATTGAACCAGAAACCGAGGGGATCCTCTTGGAGTACGGGATCGATTCAGGGCCGTTTTCAGACGAGGCTCTGGAGTGTTTACCACAGGAAACACCTTGGAAGATACCCGAGAGAGAGTTAGAGTACAGAAGAGATTTTCGGAACGATTGTGTTTTTACAATTGATCCTCTTACAGCAAGAGATCTCGATGATGCAGTCCACTGCAAGAAAACTGAAGAAGGCCGCTTTGAGGTGGGCGTTCACATCGCTGACGTGAGCTTTTTTGTTCGCCGAGGTACTGCGCTGGACGAAGTCGCTTTGGAAAGGGGGACTTCCACCTACATGGTGCAAAAAGTCATCCCCATGCTCCCGCGACGCTTATGCGAAGAGCTGTGTAGTTTGAACCCTGGAGAGGATCGTTTGACTTTCTCCGTTGTTTGGCAAATGTCTGATAAAGGAGAAATCTTAGACGAGTGGAAAGGAAGAGGGATCATTCGCTCCCGCATCAAGATGGCGTATGAACACGCCCAAGATATGATTGAGAAACCAAACAGGCAGTGGAATCTGAACGAGCTGCCTCCGATCTCAGACGGTGCGACAGGGGAAGAAATTTCTGCGCAGGTGAATCAGCTTCATAAGTTTGCAGTGCGCCTTCGTCGAAACCGTATTGAGAATGGCGCGTTGCGCCTTGATCAAGTGAAAATCCGGTTTGACTTGGATCAAGAAACCGGTTTGCCTAATGGATACCACGTGCATAAGCAACGCGATGCGAACAAGCTTATTGAAGAGTTTATGCTGCTTGCGAACATGGCGGTAGCACATCATATTTATGCTGTTTATCCAGAGATGGCGCTGTTAAGACGCCATCCCAAGCCCCACCAGAAGCAACTCGATGATCTGATGGAGTTATGCAAATCGTTTGGTATCTGCTTCAACGGGACCTCATCCAAGACCATCCAAGAGTCTCTTGCACAGTTTCCCCTGTCCTCTCCCGAGAGGGAAGTTTTGGTCAATTTGACCATGCGACCAATGAAGAACGCGGAGTACTTTTGTACAGGGTCCGTAGAGGAAGACGAATATGGACACTACGCTCTGAGCGTACCTCTATACACGCACTTTACGTCCCCGATCAGAAGATACCCGGATTTAGTAGTGCACAGGCTCTTGGCCGCAAGCCTCGGCGTAGATGAACCGCTGAACCAAGGGCCCGACAGCATTGATGTTATAGCACAGCACTGTAATGATCGTAAACTCGCCGCCAAGCAAGCCAGTGAACTGAGCAATGATATGTTCTTTGGTATTTTTGTGCGTGAAAGCGGTCCTCTTGAAGAAGACGGCATAGTTTTGAATGTCATGGACCAGTCTTTAGATGTTTTGGTACCTGAACTGGGTGTGGTTAAGAGGGTGTACATGCAGTTCTGCCCCGGAGTGAAAAGCTTTGCGTTTACCAAGGGAGAGAAGGGAAAACCGAATGAGTTGTGCCTGCTTTGGAGTGTCAAGCTCAAATCGTGTGATGACACTTACGATGAGGAACAAGTGTTAAAGATTTTTCACCAGGTGCGGGTGATCTTGACCACTGAAAGCGAAACGGAGACCAAAACGCCGAATCCTTTCAAAGTTATGGCCAAACTTGTTCCAAAACTGAACTGTGGAGACGAATATTACATTCCGACAACTCCAGCAGTTAACAAGTCTCTCACGAAGAAAAAGACTGCTGCCAACTCTGCAGACGTAAGTCTTCCGAAAACTTCCGATGATATCCGAAAGAAGCTTTTTGATTCGGAACAGGTCCCGGAAGCATCTCGTGGTCCTAACGTCATCTTCGGGTCCGAAGGAGGGGATGGCGTCAAGAATTGTGAAGCAGAAGAAACAGCGTCGCTTGGTTCTGATGATGTTATTGTGGAATCCGAAGAGACAAGCAACTTACCAAATGCTAACGATGAGTCTACGAACGTTGCCGAAGATGAATCCGATGATGTTATTGTGGAGTCCGACGAGGAGAATGACAGTCTGCAGAATGTAAACAACGAATCCACGAACAAAGCCGACGATGaatctgatgacgtcataatcgAGTCGGAGTCAGACGCCGACTAAACGACTTGTCAAAACATTAAGTTTAATCGTAGAACTTGCACTGTCAAGAATTGTCTTGGTAGATTTTATTATGACctagttttatttattattttttcaactGGGGCACATCTTTTAGCTGAAGAAATGAACATAAGTGAATTTTAATATTCATTCGTTAATCGattgtaattatttattagagcagttttcaatagcccttttcacagttaccttttctcatttgcatgacaatgtatttgaacgtgaatgtgaggcaatttcgggcaattttgcactttttgcgtGAAATTGCCTCAcgtccacgttcaaatacattgtcatgcaaatgagaaaaggtaactgtgaaaagggctattgagtgtcgaaagtaattagcgttttgctttggttttgctttacctcgctctgtgattggttaaaaaatctcgcgccactttctcgaccaatcagaagtaaaactcaaaccaatcccgacttgctcgcacgcgttttcccgcgcttggcgccggttacatgtattttcttcgagttctgattggttcattgggtaatttgtgtttgttgtgcttggcttgggtaattactttggttttagttttacgacactcattagAAAAGCGCTCTATGTGTGGTACagaattaatttgttttaaaacaataattttatcTGAACCATAAGCCCTTGCCAAGAGAGGCAAAAGTCTACCATTGAAAAATGTATTTCGTAGCAACAAGATTGATTCAAATTAAAAGATGGTAGCACAAATGGGTTCGAAATTTTGAGGGGAAACGATCGAGATCTAAGAATATGAAATAGCGACAGCGATTTTCCAAAGACGTACGGAAAGCTAAATGGATTCCGGCTGCGCAACATGTTACACACTAGTAGAAATTTGGATTCGTACCCAGGTGCTTCTTTTTTCACGAGACCAATTGGCTATTTACATGTACAAAGCGCGGAGGATTTTAATTCAGGACCACCGGAGAAAATTCAACAAAGGCAGGGAGGAGCAGTCCCGTCTTCGGGCCTTTACGCGCTTATCTAGTGACAGCGTGAGGCTTAAGACCCACCACAAATCgacgggtgacgtcacatttaaTTTCCCACCGAGGGCGACTGGAAACGAGGCTGAGGGAGGAGCATTCGAACCCAGGTGGTCCGAATTACAAGTAATAACAAAAAGTCCAGCGGTCTAACCACTAGGCGACGCTGACATCCTCTAATGCCCCACCTCGGTATTGCGGCCACTTTTTGAGGGCCGGACAAAAGTTCATGCAGTCGTTTTCTTACCTGAAAATATCTCATTTTTGTGACAACACCACATGcctttaaggtcattcccctgtattgcattacgcatccttactgcgcacgatttgttgcgccattagcgcgcgcacgcccagggagtaataggtttcctatgaggctaagctcaaaagagaaaacatggaaaagaatagttatttactcttaagcAAGCgtggggacctatcttttttttcaaatatttttaaccTACCATTCATTCTCTTTTTGTTcgaagagttagaaaaaaaacatgttggaaaaaaaattattactagaaacgcgttgcTCACGTAGATCAAATCACGACCTCGAAAACACGCacgtaaggaaggttttaagtcaattttgtctgatgcttcgagcatctgctaTAAAacttctagtaaattgttccttgttatcgatattttacatctagtacattgtttcaaagTTTGCTTTAATCATGTACTTCCTCTACCTACGGAAAGtggcgtaaactgatcaaataaacaagtgttcgttaggcgaaattgcaaggaatgatggggtaacttgagacgatgatatctcgtaaacgaaCAGGGaaacctattctttttattttatttttcaaaacattgaccgacagataacaacttgtgaaagtttgccAAAAATcctatgttaaattttatttcgggggaatgaccttaaggcATGCCGGTGGTGGTTCCAACAAATCTTTCGTTGCGGTAGTTTTCATTTTCGTCTTTCATTTCACGACTGTCGAGCTTAGTGTCACGATGTACAGAGGATTAAAACCACTGAAAATAGCGATACAGGAAATAAGCCAAGCAAAgtaagaaaaaacaagaaaagttttctttccttttgagGAGTTTCCACACGGTTAGCTCATTTGCACTATTTGAAGTAAACAACACAAACTTATCAAAACCTAAGTCTACCTTAATTAGGTAACAGTAAGCAACACTAAGGGTATGGTATAATATTTAATAACTTCTTATAAACACAAGAGAACGACGGAAGAAAGTGAAACTCTTGATGACGGCATTTTAAATCATCATTCTTTTTCCCCgttattttctttcaacattTAAGTGCCCCATGCACGTCATTGTAAGCCaagagtttttctttttacatgGTGCACCTGCACCAACACTTGGCAAGACGGCAAACTATTGCTAAGTATCGATGTGGATGTACATGCTGATGTAGATTATTTACAGGAAAATTTGCCCATGCACCAGTCAAAGTTATTATACAGGTTTACGGGTAACCGGTAATGTACAGTACAGGTTTACAGTATAGCACAGGTTTTAATGTACAGGTTTACAAAGAACAGGTAATGCACTATTTCAGAGACACCTTAAAAAACGCGTTGCTTATTTCCATACCCCGTCGGATACCCACGCGCGCAGGCTAACTTATGCTTTCCGTCTCAACTAATTTCCATATCAAAGGTTTTGTACCACAAGCATCGCTTAGTAGAGAGCAAATGTTGCTGAGTACAACTTTGTTTTACGAATGTTTCACGGCAATCGGACGTTCTTCAGCAAAATTTAACATTGTTCGACATCTTTCAGAATCATTTGATGTCCTTTAACAGGGTGCCCAAACGCGGTTGACCttttgaattcaacaatgttgaacggtaTTAAATGCAAATGTTGAATTCATTTTATAGCCAGGGCCttactgccattttcagtaacACACGAACCGTGAAGTTCATTAAAACTCACGAAGCTGCGGGGTGTTAGAGGCTAACATTTCCGCTTAATGGTCGGATGCCTtgaccactgagctactgggagactggtGCCGAGCTACGTCATATTTACAAGATTCATTATCACACGATTCCTGTATACTACTGGGAGCTGAACAATGTCAAAAGCGTTCTGTGTAACGATTAAGAAGAAAATGTTGTAAGGTTTGAGCTAGGTCATGAGATAAGAAAGATCAATAACATTCCACATGTCACGAGCGTGGAACAAAGCGTCTGTAagttcacatgataccagaatgagcttcattccggaatgagtttcgttccagaatgaagttcatactgcattcacatgacaaaatcgaccggcTCAGCCTAAGAGGATCTTGCGCGCGCGGTTTTCGCGCCAGTTCAAAACCAAAAAGGGCGCAAGTTTCGCGCGACATGTCACGCATGCGCCACTCGTcccagactacacggtttgcgGTTTCATCCCGGAACGGatttcgttttcagtttacatgataccagaatgacaTGTCTTgccagaacgagaatttcattcggattgaaaaccggaatgaactcattctGGAATGACTTGTGCGGGAACGAAATTGCGTTTCGGTGTCATGTAAACAGAtaagagaaatatatgggggtGGAAAGAACTGCTAAAGGCAAaaccacagcgacaaaccagtgaggagtgccggatcttgtgtagacctggatcagtaaaaatcttgaagacgaaagtaaacaacagtaaactgatccttac

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007169 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17877 all species →	Dis3l2_C_term	DIS3-like exonuclease 2 C terminal	Domain	Interproscan
PF17849 all species →	OB_Dis3	Dis3-like cold-shock domain 2 (CSD2)	Domain	Interproscan
PF17216 all species →	Rrp44_CSD1	Rrp44-like cold shock domain	Domain	Interproscan
PF00773 all species →	RNB	RNB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050180 all species →	Family	RNR Ribonuclease	Interproscan
IPR001900 all species →	Domain	Ribonuclease II/R	Interproscan
IPR041093 all species →	Domain	DIS3-like exonuclease 2, C-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR022966 all species →	Conserved_site	Ribonuclease II/R, conserved site	Interproscan
IPR041505 all species →	Domain	Dis3-like cold-shock domain 2	Interproscan
IPR028591 all species →	Family	DIS3-like exonuclease 2	Interproscan
IPR033771 all species →	Domain	Rrp44-like cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23355 all species →	RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0010587 all species →	Biological Process	miRNA catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0034427 all species →	Biological Process	obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18758	DIS3L2; DIS3-like exonuclease 2	EC:3.1.13.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_026183-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

85TPM > 0

7Conditions

1,493.3Max TPM

245.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	20	233.18	563.98
holobiont · low.pH Control.temp	20	20	312.53	613.92
holobiont · control.pH_high.temp	20	20	288.78	1,493.26
holobiont · control.pH Control.temp	19	19	212.64	730.79
Whole organism	4	4	25.30	27.46
unannotated	1	1	16.21	16.21
live coral tissue/skeleton	1	1	20.17	20.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	563.98
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	416.79
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	394.45
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	389.48
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	336.57
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	334.51
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	295.92
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	280.10
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	258.31
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	253.26
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	186.34
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	186.03
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	144.71
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	111.72
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	100.97
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	95.04
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	92.82
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	89.61
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	79.26
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	53.74
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	613.92
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	533.54
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	507.30
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	468.19
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	435.35
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	387.45
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	363.41
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	345.36
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	293.80
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	292.22
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	292.13
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	267.56
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	264.50
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	224.59
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	216.32
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	205.35
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	171.96
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	169.97
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	104.89
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	92.83
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	1,493.26
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	899.14
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	495.64
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	412.12
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	340.72
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	291.09
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	277.49
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	269.38
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	218.53
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	169.70
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	163.45
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	160.22
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	98.18
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	88.94
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	80.90
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	68.19
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	66.86
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	64.33
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	62.07
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	55.29
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	730.79
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	522.23
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	430.13
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	406.64
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	384.83
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	192.71
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	183.87
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	158.02
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	156.74
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	107.96
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	104.95
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	103.30
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	103.07
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	96.48
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	91.10
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	76.59
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	72.10
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	65.39
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	53.18
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	27.46
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	26.22
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	25.70
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	21.82
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	16.21
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	20.17

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.